Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1384 ATGAAGAGCTCAGACGATTTATTCCATGGAAGCCAGGTTACAACTTACAACGGCTGGACAGAGGAACAGAGGCGAACCAAACAAGGTCATACGCTTCACCAAAACAATCATACAAGCAAGGTCATGATCACTACAAGGGTGGTGGTCATCCACCTTATTAGTACAGAGTCTCACAAGATCCAAGGCTTTTTCATCAGTCAGATAATACACCATGAAAGCCAGAAAATTGCTTGGTACGAGAGAAGGCAAAGCAGGGAAGGATTTCTGCAGTTTCTCTTGAATCTCAAGGATGAAGGAGATTCCAAGACGCCGTTAAAAATGGCCCATGTCAAGGCCTTGCTCACGGGCATGGTGGTGGGCGGAACTGACAGCACATCTAATACACTTAAATTTGCCATTGCTGACATGATGAACAAACCAGAAGTGATGAAGAAGGCACAGCAAGAATTAGACGTGGTAGTTGGCAAGGATAGCATAGTAGAAGAGTCTCACATTTATAAATTACCATATTTATCTGCAGTGATGAAAGAGGCTATGCGGTTGCACCCAATGCTCCCTCTAATGGTTCCGCATTACCCAAGTGAAACATGCGTTGTTGGAGGTTATACCATTCCAAAGGGGGTTCGAATCTTTGTTAACTCCCAAAGTAGGGCGCATTAA 660 44.24 MKSSDDLFHGSQVTTYNGWTEEQRRTKQGHTLHQNNHTSKVMITTRVVVIHLISTESHKIQGFFISQIIHHESQKIAWYERRQSREGFLQFLLNLKDEGDSKTPLKMAHVKALLTGMVVGGTDSTSNTLKFAIADMMNKPEVMKKAQQELDVVVGKDSIVEESHIYKLPYLSAVMKEAMRLHPMLPLMVPHYPSETCVVGGYTIPKGVRIFVNSQSRAH* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24480164 24489603 + Vvi5g1384 Vvi5g1384 787526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1384 219 PRINTS P450 superfamily signature 120 137 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 PRINTS P450 superfamily signature 173 184 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 SUPERFAMILY Cytochrome P450 61 215 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 PRINTS E-class P450 group I signature 109 126 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 PRINTS E-class P450 group I signature 129 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 Gene3D Cytochrome P450 7 219 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 PANTHER CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 3-RELATED 58 214 - -
Vvi5g1384 219 Pfam Cytochrome P450 26 216 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi5g1384 219 PANTHER OS08G0547900 PROTEIN 58 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1384 - - - jre:109011249 211.075
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023699 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2