Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1389 ATGAAAAAAAATATATTTTTCTCTGGGGAAGAAGTCAGAAACAAGCAGGTGGTTCTGCGAGACTATGTCAGCGGCTATCTCAAAGAATCAGACATGTGTATGGCCACAGCCACCATCACCCTCAAGGTCCCAGAGGGTAATTCCAAGGCCGTTCTGGTGAAGAACCTCTATTTATCTTGTGATCCCTACATTCGTGGCCATACCAAAAGCATTCAGGGTGGCTATGCTGATGAATATTTCAAGCCTGGCTCTCCTATAGTGGGATATGGAGTGGCAAAAGTTTTGGATTCTGGGCATCCAGACTTCAAGAAAGATGACTTGGTTTGGGGATTTACAGGATGGGAAGAGTATAGTCTCATCACAGCAACTGAGTCTCTGTTTAAGATTCATCACACAGATGTGCCCCTTTCATACTACACTGGACTTCTCAGTATGCCTGGGATGACTGCCTATACTGGTTTTTATGAGGTTTGTGCTCCTAAGAAAGAAGAGTATGTCTTCGTCTCATCCGCATTTGGAGCAGTGGGTCAGCTTGTTGGGCAGTTAGCCAAGTTGCTAGGTTGCTATGTTGTTGGAAGTGCAGGGTCAAAAGAAAAGGTTGATCTGTTGAAGACCAAGATCGGGTTCGATGAGGCTTTCAACTACAAAGAAGAGAAGGATTATGACGCCTGTCTGAAAAGGTACTTCCCTGAAGGCATTGATATCTACTTTGATAGTGTGGGGGGAAAGATGCTTGATGCAGCGCTGCTCAACATGAGGCTCGATGGCCGCATTGCAGCGTGTGTATTAAGGAAATTATATGTTAGTTATTGTATGATTATCTTGACATAA 831 44.16 MKKNIFFSGEEVRNKQVVLRDYVSGYLKESDMCMATATITLKVPEGNSKAVLVKNLYLSCDPYIRGHTKSIQGGYADEYFKPGSPIVGYGVAKVLDSGHPDFKKDDLVWGFTGWEEYSLITATESLFKIHHTDVPLSYYTGLLSMPGMTAYTGFYEVCAPKKEEYVFVSSAFGAVGQLVGQLAKLLGCYVVGSAGSKEKVDLLKTKIGFDEAFNYKEEKDYDACLKRYFPEGIDIYFDSVGGKMLDAALLNMRLDGRIAACVLRKLYVSYCMIILT* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24525590 24528834 - Vvi5g1389 Vvi5g1389 787531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1389 276 PANTHER PROSTAGLANDIN REDUCTASE 13 275 IPR045010 GO:0016628
Vvi5g1389 276 SUPERFAMILY GroES-like 12 179 IPR011032 -
Vvi5g1389 276 Pfam N-terminal domain of oxidoreductase 15 124 IPR041694 -
Vvi5g1389 276 Gene3D - 17 141 - -
Vvi5g1389 276 Pfam Zinc-binding dehydrogenase 174 261 IPR013149 -
Vvi5g1389 276 Gene3D - 142 261 - -
Vvi5g1389 276 PANTHER (+)-PULEGONE REDUCTASE-RELATED 13 275 - -
Vvi5g1389 276 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 141 267 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1389 K19825 DBR; 2-alkenal reductase (NADP+) [EC:1.3.1.102] - vvi:100262970 521.546
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000230 2 7 2 5 2 5 1 7 8 6 7 7 5 7 6 4 7 9 4 6 4 6 5 5 4 6 2 6 7 7 159