Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1400 ATGAAAAAGGATCCATTTGAAGGGCCCAAGAGAGCGTATGAAGCCCGAAGCGAGGAGTTCAGAATCAGTGACTGGGTTTGTGGGTGGATGGGACTTTGTGTACCCTCCGGGAGGATCAGCGGCGGTGTCTGTGGCCTCCTGAGCGGCCGTAGTCTGACGTGGGCGAAGAATCTGGGAGTTTCTACAACACAATTGCGCATGTCGAACAACGGCAGCAGCATAGAATCGAACCCAAAGGTTCAAAAATTAAATCAAATCATCGGAAGCGACTCCGCTGGTGGTTGGGAAAAGAGCTGGCAGCAAGGACATACTCCATGGGATTTGGGAAAGCCAACACCTATAATTCAACACCTTCATCAGACTGGAACCCTTCCCAGTGGCAAGACTTTGGTCCCTGGTTGTGGCTGTGGTTATGATGTGGTAACAATTGCATGCCCTGAACGTTTTGTTGTGGGGTTGGACATATCAGACAGTGCCATCAAGAAAGCAAAAGAGTTATCTTCCTCATTATGGAATGCAAATCATTTCACATTTTTAAAGGAGGACTTCTTCACTTGGAATCCCACTGAGTTGTTTGATCTGATTTTTGATTATACGTTTTTTTGTGCAATTGAACCAGACATGAGATCAGTGTGGGCCAAACGAATGCGACATTTGTTAAAACCAGATGGAGAGCTCTTGACACTGATGTTTCCGATCAGTGATCATGCTGGTGGACCCCCATATAAAGTATCTGTAGCCGATTATGAAGAAGTGCTGCATCCAATGGGATTTAAAGCAGTTTCCATTGTGGACAACAAGATGGCTATTGGACCTCGCAAGGGAAGAGAGAAACTTGGACGGTGGAAAAGGACTCCAAGCAAATCCTTACTATGA 876 46.12 MKKDPFEGPKRAYEARSEEFRISDWVCGWMGLCVPSGRISGGVCGLLSGRSLTWAKNLGVSTTQLRMSNNGSSIESNPKVQKLNQIIGSDSAGGWEKSWQQGHTPWDLGKPTPIIQHLHQTGTLPSGKTLVPGCGCGYDVVTIACPERFVVGLDISDSAIKKAKELSSSLWNANHFTFLKEDFFTWNPTELFDLIFDYTFFCAIEPDMRSVWAKRMRHLLKPDGELLTLMFPISDHAGGPPYKVSVADYEEVLHPMGFKAVSIVDNKMAIGPRKGREKLGRWKRTPSKSLL* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24588858 24593551 - Vvi5g1400 Vvi5g1400 787542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1400 291 CDD AdoMet_MTases 130 228 - -
Vvi5g1400 291 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 284 IPR029063 -
Vvi5g1400 291 Gene3D Vaccinia Virus protein VP39 62 288 IPR029063 -
Vvi5g1400 291 Pfam Thiopurine S-methyltransferase (TPMT) 92 284 IPR008854 GO:0008757
Vvi5g1400 291 ProSiteProfiles Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile. 92 284 IPR008854 GO:0008757
Vvi5g1400 291 PANTHER - 64 289 IPR044995 GO:0008757
Vvi5g1400 291 PANTHER THIOL METHYLTRANSFERASE 2-RELATED 64 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1400 K21552 HOL; methyl halide transferase [EC:2.1.1.165] - vvi:100267940 548.895
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1400 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .