Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1401 ATGGCGAACGACAGTACCAGCATAGAATCGAACTCAGAGCTTCAAAAAATAAGCCAAGTCATTGGAAGCGGTTTCAATGGTAGTTGGGAAGAGAAATGGCAACAAGGATTAACTCCATGGGATTTGGGAAAGGCAACACCTATAATTGAACACCTTCATCAGGCTGGAGCCCTTCCCAATGGCAGGACTTTAATCCCTGGTTGTGGCCGTGGATATGATGTGGTAGCAATTGCATGCCCTGAACGTTTTGTTGTGGGGTTGGACATATCAGACAGTGCTATCAAGAAAGCAAAAGAGTCATCTTCCTCATCATGGAATGCAAGTCATTTTATCTTTTTAAAGGCAGACTTCTTCACTTGGAATCCAACTGAGTTGTTTGATCTGATTATTGATTATACGTTTTTTTGTGCAATCGAACCAGACATGAGACCGGCATGGGCCAGCCGAATGCAACAATTGTTGAAACCAGATGGAGAGCTCTTGACACTGATGTTTCCGATCAGCGATCATACTGGTGGACCCCCATATAAAGTATCTATAGCCGATTATGAAAAAGTGTTGCATCCAATGAGATTTAAGGCAGTTTCGATTGTGGACAACGAGATGGCCATTGGATCTCGCAAGGGAAGAGAGAAACTTGGAAGGTGGAAGAGGACTGACGAGCCCTTGCTGTGA 675 44.15 MANDSTSIESNSELQKISQVIGSGFNGSWEEKWQQGLTPWDLGKATPIIEHLHQAGALPNGRTLIPGCGRGYDVVAIACPERFVVGLDISDSAIKKAKESSSSSWNASHFIFLKADFFTWNPTELFDLIIDYTFFCAIEPDMRPAWASRMQQLLKPDGELLTLMFPISDHTGGPPYKVSIADYEKVLHPMRFKAVSIVDNEMAIGSRKGREKLGRWKRTDEPLL* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24593708 24597879 - Vvi5g1401 Vvi5g1401 787543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1401 224 ProSiteProfiles Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile. 26 218 IPR008854 GO:0008757
Vvi5g1401 224 PANTHER THIOL METHYLTRANSFERASE 2-RELATED 4 221 - -
Vvi5g1401 224 PANTHER - 4 221 IPR044995 GO:0008757
Vvi5g1401 224 CDD AdoMet_MTases 64 162 - -
Vvi5g1401 224 Gene3D Vaccinia Virus protein VP39 2 221 IPR029063 -
Vvi5g1401 224 Pfam Thiopurine S-methyltransferase (TPMT) 27 218 IPR008854 GO:0008757
Vvi5g1401 224 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 28 218 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1401 K21552 HOL; methyl halide transferase [EC:2.1.1.165] - vvi:100262791 439.113
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1401 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .