Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1402 ATGGGAGTGATAGAGGAGGGGAGTATATCGGGATATATACCCAGCAATGAAGCTTTTTCTGTTCACTATCCGGCTTACCCTTCCTCCACAGCTCGCGCCATTGAAACCCTAGGTGGAACTCAAGCTATCCGTAAGGCTCGGAGCTCTCAATCAAACAAGTTGGAGCTCCATTTCCGGCCTGAGGACCCATATTCACATCCTGCATTTGGGGAGCTTCAGCCCTGTAATAATTTGCTGTTGAGAATATCCAAAAAGAAATCTACTGATGGCCAAAGTGCTGAAGTTTCCAGCAAGGTATCAAAATCACAAATATCTGGAGAAGTGCCGATAAGACTTTGTGCCGATATTATTGCTCGGGTGTCAGAGGCTTATCATTTTAATGGAATGGTGGACTACCAGCATGTTCTTCCTGTTCATGCTGATGTTGCAAGAAGAAAAAAGAGAAACTGGGCTGAAGTGGAGCCACACCTCGAGAAGGGTGACCTTGTGGATGTGGATCAAGAGGATTTGATGATACTATTGCCTCCACTTTTTTCACCCAAGGATGTGCCAGAGAAATTAGTGTTAAGACCATCAATGACATTGAACTTGAAAAAGAAACAAGAGGGAGTTGTGCAACAGCGTTGGGAGATGGGTATTGAGCCATGTCTTGCAATTGATTTTGAGATTAAAGATATCCTAATCATTTATTGCTTATATCGCATGTGCATAACATCACATATGACCAGTTTTTCTCGAATACCACTGAAACTTCTTGTCACCCCTTTGCTAACCAAAGTTGTTGAAATCATTCCTAAGAAAGTAAATTGGGAGCAATACATACCCAAGGGCTCTGAACAGTGGGAGTGGCAGATGGCTGTATCTAATCTGTTTGATGAGCGGCCTATATGGCCCAAAGGTGCACTGACTGAACGCTTGCTTGATAAAGGTCTAAATGTTGGAGATTATACACTTAGAAGGCTTCTGTTTAGAACTGCATACTACTTTTCAAATGGACCCTTCCTGAGATTTTGGATCAGAAAAGGATATGATCCTCGGAAAAATCCTGATTCTTGCATATATCAGAGAATAGATTTTCGAGTACCACCATCCTTACGAAGTTATTGTGATGCTAATGCAGCCAATGGGTTGAAGCAGAGATGGGAGGATATATGCTCATTTCGAGTATTTCCTTATAAGTGCCATACATCATTGCAGTTGTTTGAACTTGCTGATGATTACATTCAACAAGAGATAAGAAAGCCTTTAAAGCAGACGACCTGCACTGGTGCTACAGGATGGTTCTCATATCGTGTGCTGGAGAGCTTGAGGTTATGTGTCATGGTGAGGTTCCTATCAATATGCCCTGAAACAAGTGCAGAATACTTACTGAAATCTGCTTCTGATCGATTTGAGAAGTCAAAGAGGATGCACATATATGAAAACAACTTGAGACCCAATGAAGAGGGGATCCAAGAAGTCAATAAAGAACTGGAAGGTGACAAAGATAAAGAGGAACCCAATGATGTGGATGATGATGAGGAAGATGAAATGGAGGCTGAGAATGGTGAAGAGGAATTGGATGCATATGAGGCACTAGATATGGTTGGTGAGGATGATGAAGATTCTTTGCAATCACGTTCATATCTAGATGCAGAGAACATCTCAAGGGACTATTTGCAAGGGCTTTTTGGTAGCTTCTCATTCACAAAAGCAGGTGGTGGTGAAGTGCAAGATGCTGACACCAGCGATGGAGAATATCAAATCTATGAGCAAGACAGTCTTGGCGAGTACTCTGATGATGATGACTACTAA 1794 42.14 MGVIEEGSISGYIPSNEAFSVHYPAYPSSTARAIETLGGTQAIRKARSSQSNKLELHFRPEDPYSHPAFGELQPCNNLLLRISKKKSTDGQSAEVSSKVSKSQISGEVPIRLCADIIARVSEAYHFNGMVDYQHVLPVHADVARRKKRNWAEVEPHLEKGDLVDVDQEDLMILLPPLFSPKDVPEKLVLRPSMTLNLKKKQEGVVQQRWEMGIEPCLAIDFEIKDILIIYCLYRMCITSHMTSFSRIPLKLLVTPLLTKVVEIIPKKVNWEQYIPKGSEQWEWQMAVSNLFDERPIWPKGALTERLLDKGLNVGDYTLRRLLFRTAYYFSNGPFLRFWIRKGYDPRKNPDSCIYQRIDFRVPPSLRSYCDANAANGLKQRWEDICSFRVFPYKCHTSLQLFELADDYIQQEIRKPLKQTTCTGATGWFSYRVLESLRLCVMVRFLSICPETSAEYLLKSASDRFEKSKRMHIYENNLRPNEEGIQEVNKELEGDKDKEEPNDVDDDEEDEMEAENGEEELDAYEALDMVGEDDEDSLQSRSYLDAENISRDYLQGLFGSFSFTKAGGGEVQDADTSDGEYQIYEQDSLGEYSDDDDY* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24617174 24654920 + Vvi5g1402 Vvi5g1402 787544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1402 597 MobiDBLite consensus disorder prediction 489 519 - -
Vvi5g1402 597 Pfam Tau95 Triple barrel domain 20 134 IPR041499 -
Vvi5g1402 597 MobiDBLite consensus disorder prediction 568 597 - -
Vvi5g1402 597 Gene3D TFIIIC, subcomplex tauA, subunit Sfc1, barrel domain 10 135 IPR042536 -
Vvi5g1402 597 PANTHER GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 6 588 IPR040454 GO:0000127|GO:0006384
Vvi5g1402 597 MobiDBLite consensus disorder prediction 497 519 - -
Vvi5g1402 597 Pfam RNA polymerase III transcription factor (TF)IIIC subunit HTH domain 172 360 IPR019136 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1402 K15202 GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) - vvi:100247425 1052.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1402 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007255 1 3 0 2 0 1 1 1 1 0 2 1 1 0 0 1 1 1 1 1 1 1 1 2 3 2 0 1 0 1 31