Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1405 ATGTGGCGGCGTCTAGGAACGGACTCTCCGAGGAAGTTACTCAGAAGATTCTCAATCAGTGATGTGAACTTGGCGACGACAGAGCATCTTATGAGGTTCATCAACAAAGATCCTGAAGGATATGTGCCAATATCCGTTGTTGCATCTTTTAAGAAGATTAAAGCCCTCGTAAGTAGTCATTCCCAGCTTGCTACAGTTCTTCGGAACTCAACAAAGCTGGTGGTTAGTGAAGATGGAAAGAAAGTTAGACGCCTTCATCCCCTGACCGAGTCAGACATGGAAGAGTTGCAGTCTCGCATAGTTGTTGCTGAAAATCTACCCGAGGACCATTGCCACCAAAACCTCATGAAGATTTTCTCTGCTGTTGGGAGTGTGAAGACAATTCGTACCTGTCAGCCTCAAACTTCCAATGGAGGGGCCTCTTCAGCTGCTAGATCCTCTAAAACAGACAACATGCTTTTCAGCAACAAGTTGCATGCATTCGTGGAGTACGAATCCATTGAGCTGGCTGAGAAAGCAGTTGTGGAGCTAAATGATGAGGGGAATTGGAGGAGTGGTCTTAGAGTTCGCTTAATGCATAGACGAGTGGCAAAATCTGCTCAAGCACGAAGTAGAAAGGGGCATGAAGGTGAAGCGATTTGTGAGGAAGATGATGCTTGTACATCTGAGCAGCTACCAAATGACAAACAGCCAGAAGATCCTGATGTCCATTCTCACGAGCACGCTGGGGAGGAGCATATCAATGACAAGGAGGGTGCACAAAGGAAAGGGCGTAGTCGTGGGCGGGGCAAGGGTCGTGGACGGGGTCAATATCATCATCATGGTAACCGTGGAAATCATGTAGGGACTCCTCCAAATAGTTCAATCAATCACGAACAGCCAGCTGTAGCAAAGCCACCTCCTGGGCCACGCATGCCAGATGGTACGAGAGGATTTTCTATGGGCCGGGGGAAGCCAGTGGCTGTTAATATTGCATGA 978 48.06 MWRRLGTDSPRKLLRRFSISDVNLATTEHLMRFINKDPEGYVPISVVASFKKIKALVSSHSQLATVLRNSTKLVVSEDGKKVRRLHPLTESDMEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCQPQTSNGGASSAARSSKTDNMLFSNKLHAFVEYESIELAEKAVVELNDEGNWRSGLRVRLMHRRVAKSAQARSRKGHEGEAICEEDDACTSEQLPNDKQPEDPDVHSHEHAGEEHINDKEGAQRKGRSRGRGKGRGRGQYHHHGNRGNHVGTPPNSSINHEQPAVAKPPPGPRMPDGTRGFSMGRGKPVAVNIA* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24673705 24694003 - Vvi5g1405 Vvi5g1405 787547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1405 325 SUPERFAMILY RNA-binding domain, RBD 96 193 IPR035979 GO:0003676
Vvi5g1405 325 SMART la 8 85 IPR006630 -
Vvi5g1405 325 ProSiteProfiles La-type HTH domain profile. 1 92 IPR006630 -
Vvi5g1405 325 Gene3D - 89 203 IPR012677 -
Vvi5g1405 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 196 IPR000504 GO:0003723
Vvi5g1405 325 MobiDBLite consensus disorder prediction 228 258 - -
Vvi5g1405 325 Pfam La domain 19 69 IPR006630 -
Vvi5g1405 325 PANTHER LA-RELATED PROTEIN 6B-LIKE 292 321 - -
Vvi5g1405 325 PANTHER LA-RELATED PROTEIN 6B-LIKE 17 275 - -
Vvi5g1405 325 MobiDBLite consensus disorder prediction 259 275 - -
Vvi5g1405 325 Gene3D - 10 88 IPR036388 -
Vvi5g1405 325 CDD RRM_La_like_plant 99 192 IPR034878 GO:0003723
Vvi5g1405 325 PANTHER LUPUS LA PROTEIN-RELATED 17 275 IPR045180 -
Vvi5g1405 325 PANTHER LUPUS LA PROTEIN-RELATED 292 321 IPR045180 -
Vvi5g1405 325 MobiDBLite consensus disorder prediction 196 325 - -
Vvi5g1405 325 SUPERFAMILY Winged helix DNA-binding domain 19 95 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1405 K15191 LARP7; La-related protein 7 - vvi:100259405 577.785
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1405 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004136 1 1 2 3 0 1 2 1 1 2 1 1 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 3 1 1 42