Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1413 ATGTTTCATTTTTTTTTCTTCTTTAAACACGAGAGGAGTAGGGTTTCTTCTTATTCTTCGATCTCAATCAAGGAGTTCCCCCTCTGGATTCCATTTCTTCTCATTTCATTCTCTCCGAATCCACTTCAATCCTTTCTTTGTCCTAGATTCGATTCCCAACCTCATAATTTCACCATAGCTATAATGGCATTGTTTCTTAGAGTTCCAGCAAACACATTTCAACGAGATAACGTAGCGCTGTTATCTGGAGGTAGAAGGCAGAATAGTACCGCGCTGTTCTCTGGAGGTAGAAGGCGGAGTAGTGCTGTTTTTGGAAGGCGGAGATCGGCAATCCGGATATTGTCCATGTCGACCCCACCAATCCAACATCTAGAAAAACCTTCGGCTGGTTCGCAAAACCTCGGCCTCCCAATCATGGTGAATGGTTGTACTGGAAAAATGGGGAAGGCTGTTATCCAAGCAGCCGTTTCTGCAGGACTTCACCTTGTTCCTGTATCATTTAGCTGTGCAGAGGAATCTGGCCAAACTGTGGAAGTGTGTGGAAAAGAGATTAAATTGCATGGCCCATCTGGAAGAGAAAACATTCTTGCTTCTGTAGTTGATGAATATCCAAATTTGATTGTGGTGGACTACACGGTGCCTGATGCAGTGAATGATAATGCTGAACTATATTGCAAAGTTGGTGTGCCCTTTGTAATGGGAACCACTGGTGGGGATAGGGAACGACTGTATAAGACTGTAAAAGATTCAAATGTTTATGCCGTAATATCCCCACAAATGGGAAAACAGGTGGTAGCATTTCTTGCAGCCATGGAAATCATGGCTGAGCAATTTCCTGGAGCTTTTTCTGGGTATTCTTTACAGGTGATGGAATCTCATCAAGCCAGCAAATTGGACACATCCGGAACTGCCAAGGCTGTCATTTCATGCTTTCAGAAACTGGGGGTGCCTTTCAAGTTGGATCAGATTCAACAAATCCGGGATCCCAAGCAACAAGTTGAGATGGTGGGCGTCCCAGAGGAGTATCTGAATGGTCATGCATTCCATATGTATCATCTGACATCGCCTGATCAAACAGTTTCTTTCGAGTTTCAGCATAATGTGTGTGGTAGGTCGATATATGCTGAGGGTACCATTGATGCTACAATTTTCCTTGCCAAGAAGATTCAATTAGGCACAGAGCAGCGGATCTACAATATGATAGATGTTCTGCGGGAGGGTAATATGCGATGA 1233 43.88 MFHFFFFFKHERSRVSSYSSISIKEFPLWIPFLLISFSPNPLQSFLCPRFDSQPHNFTIAIMALFLRVPANTFQRDNVALLSGGRRQNSTALFSGGRRRSSAVFGRRRSAIRILSMSTPPIQHLEKPSAGSQNLGLPIMVNGCTGKMGKAVIQAAVSAGLHLVPVSFSCAEESGQTVEVCGKEIKLHGPSGRENILASVVDEYPNLIVVDYTVPDAVNDNAELYCKVGVPFVMGTTGGDRERLYKTVKDSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVMESHQASKLDTSGTAKAVISCFQKLGVPFKLDQIQQIRDPKQQVEMVGVPEEYLNGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTIDATIFLAKKIQLGTEQRIYNMIDVLREGNMR* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24763397 24776697 - Vvi5g1413 Vvi5g1413 787555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1413 410 Pfam Dihydrodipicolinate reductase, C-terminus 264 404 IPR022663 GO:0008839|GO:0009089
Vvi5g1413 410 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 137 404 IPR036291 -
Vvi5g1413 410 PANTHER DIHYDRODIPICOLINATE REDUCTASE 101 410 IPR023940 GO:0008839|GO:0009089
Vvi5g1413 410 TIGRFAM dapB_plant: dihydrodipicolinate reductase 138 410 IPR011859 GO:0008839|GO:0009089|GO:0070402
Vvi5g1413 410 Gene3D Dihydrodipicolinate Reductase; domain 2 262 369 - -
Vvi5g1413 410 Gene3D - 138 404 - -
Vvi5g1413 410 Pfam Dihydrodipicolinate reductase, N-terminus 137 260 IPR000846 GO:0008839|GO:0009089
Vvi5g1413 410 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 1, CHLOROPLASTIC-RELATED 101 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1413 K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] - vvi:100268085 679.478
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008911 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 3 1 1 33