Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1415 ATGGTGATATTGCAGCTTGCTCTTCCTACTACTTCTTCTGCAAATCTCCGTCCAAAGCTCCCCAGTCTTGGTGGCAAACAAGCAACTGTTCCTCCTAGCTTGTGTGTATCCAATTCACAGCAATCTGAACATCCCGCTTCATTGTCTCGCCCTGCAAATCGTCAGAGTGTTGCAGCAATAGTGTTTGGAGATGGATCAGAGTCTCAGCTATATCCGCTGACAAAGAGAAGATCAGAAGGGGCTGTTCATATAGCAGGCAGTTACAGGCTCATTGATGCAGTAGTGAGCAACTGCATTAACAGCAACATAACCAAGATATATGCTCTCACTCAATTCAATTCTACTTCACTCAATTCCCACCTTTGCAGAGCTTATTCTGGAGTAGGTCTTGAAGTAGTTGCAGCATATCAGAGCCCTGAAGCCAGGGGATGGTTTCAGGGAACTGCTGATGCTGTAAGAAGATGTTTGTGGTTAGTTGAAGAGCACCCAGTGGCTGAGTTTCTTGTCCTTCCTGGCTATCATCTCTACAGAATGGACTATCAGAAACTCATCCAGGCCCACCGGCAAAGCAAAGCTGATATAACTATTGTGGCATTGAGTGCTGAAATAAGTCGTGAAACCGGTCTTGGCATTCTAGAAGTCAATTCTGAAAATCAAGTTGTTGAGTTTAGCAAGAGGTCAGAAAAGGAGCCAGCAACTATTATTTCAGTAAGTTATTTTGGGCTATCTTCTTCTCTTTCTCAGTACTTTTCTGGTATGGGGATCTATGTGGTCAAGAAAGAGATAATGATAAAGCTTCTAAGCGAGCATTTCCCCAAGGCAAATGGATTTGGAAGTGAAGTAATACCAGGTGCAATATCCATTGGAATGAAGGTTGAAGCATTTGCCTTTGATGGGTATTGGGAGGACATGAGGAACATTGAAGCATTCTACCAAGCAAATATGGAAATCACAAAGAAAACAGACGTGGGATATAACTTCTATGATAGGGATTCTCCTCTCTACACTTTACCTCGGAATCTGCCTCCAACTTTAATAACCGATGCTGTGATCACAGATAGTATAATTGGAGATGGGTGTATTCTCGATAGGTGTGAGATTAGAGGCACAATAGTTGGTCTGAGGACAAAGATTGGAGACAGGGCAGTAATAGAGGATTCAGTGATCATGGGCTCTGATATCTACCAACCAGAGGATGAGCTTAGAAGAGACATGAAAGGGACGGGCAATGACATCCCAATTGGAATTGGGGAAGATACCCACATAAGGAAAGCCATAGTAGACAAGAATGCAAGGATTGGCAAACAAGTTTTGATAATGAATAGAGACAATGTGCAAGAAGGGAATAGAGAGGCTCATGGATATACCATCAGTGAGGGCATAGTGGTGGTTCTCAAGGGTGCAGTGATCCCAGATGGGAGCATTCTCTGA 1431 43.4 MVILQLALPTTSSANLRPKLPSLGGKQATVPPSLCVSNSQQSEHPASLSRPANRQSVAAIVFGDGSESQLYPLTKRRSEGAVHIAGSYRLIDAVVSNCINSNITKIYALTQFNSTSLNSHLCRAYSGVGLEVVAAYQSPEARGWFQGTADAVRRCLWLVEEHPVAEFLVLPGYHLYRMDYQKLIQAHRQSKADITIVALSAEISRETGLGILEVNSENQVVEFSKRSEKEPATIISVSYFGLSSSLSQYFSGMGIYVVKKEIMIKLLSEHFPKANGFGSEVIPGAISIGMKVEAFAFDGYWEDMRNIEAFYQANMEITKKTDVGYNFYDRDSPLYTLPRNLPPTLITDAVITDSIIGDGCILDRCEIRGTIVGLRTKIGDRAVIEDSVIMGSDIYQPEDELRRDMKGTGNDIPIGIGEDTHIRKAIVDKNARIGKQVLIMNRDNVQEGNREAHGYTISEGIVVVLKGAVIPDGSIL* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24787598 24790547 + Vvi5g1415 Vvi5g1415 787557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1415 476 Pfam Nucleotidyl transferase 59 319 IPR005835 GO:0009058|GO:0016779
Vvi5g1415 476 Gene3D Hexapeptide repeat proteins 340 476 - -
Vvi5g1415 476 CDD ADP_Glucose_PP 59 303 - -
Vvi5g1415 476 SUPERFAMILY Nucleotide-diphospho-sugar transferases 56 363 IPR029044 -
Vvi5g1415 476 SUPERFAMILY Trimeric LpxA-like enzymes 339 475 IPR011004 -
Vvi5g1415 476 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 36 476 IPR011831 GO:0005978|GO:0008878
Vvi5g1415 476 CDD LbH_G1P_AT_C 342 470 - -
Vvi5g1415 476 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 144 152 IPR005836 GO:0005978|GO:0008878
Vvi5g1415 476 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 37 339 IPR029044 -
Vvi5g1415 476 PANTHER INACTIVE GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT 2, CHLOROPLASTIC 36 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1415 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - vvi:100262934 894.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024862 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2