Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1417 ATGACGAGAAATTGGGGGGGACTGTCCAGGTGTTGGGATGAGACGGTGACAGAAATGCGCATCGTTTCTCCCGTCTTTCCTCCACTCCACTTTACTCACTGCGCTCTCTCTCTCGCTCTCTCTGCTTCACCTTCGGTTTTCACTCTTTTCAATTTGGTGAGCTACACATTTGCGTATTGCTGGCTTGCTCTGGTGGATCTACATGCCTTTTTCTCTACGATTATCAACAAACCGTCTGATCTCTGCTGCTTAGGTATGTCGTCATCTGATAAGCCAGAAGAAGTAGTTGAAAGGGATGCTAAGGAGAAAGATGACAAGAACGAAGAAAAGGGTGGATTTATTGAAAAGGTAAAGGACTTTATTCATGACATTGGTGAGAAGATTGAAGAAGCCATTGGATTTGGGAAACCCACTGCAGATGTTACAGGGATTCACATTCCTAAAATTAATCTTGAAAGAGCGGATATTGTTATTGATGTGCTTGTTACCAACCCAAATCCCATTCCAATCCCTCTGGTTGACATAGATTACTTGATTGAGAGTGATGGAAGAAAACTGGTTTCTGGTTTGATCCCGGATGCCGGAACAATCAATGCACATGGTTCAGAGACTGTCAAGATTCCAGTTAGTCTCATTTATGATGACATTAAGAACACATACAGTGATATCAAGCCTGGGAGCATTATTCCTTACAAGATCAAGGTCAACCTTATTGTAGATGTGCCTGTCTTTGGAAGGTTAACTCTACCGCTTGAGAAAACAGGAGAGATACCCATACCTTACAAGCCTGATATTGATCTTGAGAAAGTACAGTTTCAGAGTTTCTCTTTTGAGGAAACTGTTGCAGTTCTTCATTTGAAATTGGACAATAAGAATGACTTTGACTTGGGCCTCAATGGGCTGGACTATGAGGTTTGGCTAGCTGATGTAAGCATTGGAGGTGCAGAACTCTCCAAATCTGCTAAAATTGAAAAAAATGGAATCAGTTGCATTGAACTTCCCATCACCTTCAGGCCGAGGGAATTTGGCTCAGCACTTTGGGATATGATTAGAGGAAAAGGTACTGGGTACACCATGAAAGGAAATATTGATGTGGATACACCATTTGGAGCAATGAAGTTACCCATCAGCAAGGAGGGTGGGTCCACACGCCTCAAGAAGGACAAAGGTGTTGGTGAAGATGACGATGACGATGAGGATTAG 1203 42.81 MTRNWGGLSRCWDETVTEMRIVSPVFPPLHFTHCALSLALSASPSVFTLFNLVSYTFAYCWLALVDLHAFFSTIINKPSDLCCLGMSSSDKPEEVVERDAKEKDDKNEEKGGFIEKVKDFIHDIGEKIEEAIGFGKPTADVTGIHIPKINLERADIVIDVLVTNPNPIPIPLVDIDYLIESDGRKLVSGLIPDAGTINAHGSETVKIPVSLIYDDIKNTYSDIKPGSIIPYKIKVNLIVDVPVFGRLTLPLEKTGEIPIPYKPDIDLEKVQFQSFSFEETVAVLHLKLDNKNDFDLGLNGLDYEVWLADVSIGGAELSKSAKIEKNGISCIELPITFRPREFGSALWDMIRGKGTGYTMKGNIDVDTPFGAMKLPISKEGGSTRLKKDKGVGEDDDDDED* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24796798 24802680 + Vvi5g1417 Vvi5g1417 787559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1417 400 SUPERFAMILY LEA14-like 124 265 - -
Vvi5g1417 400 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 86 400 - -
Vvi5g1417 400 MobiDBLite consensus disorder prediction 375 400 - -
Vvi5g1417 400 PANTHER - 86 400 IPR045043 -
Vvi5g1417 400 Gene3D - 111 261 - -
Vvi5g1417 400 Gene3D - 262 384 - -
Vvi5g1417 400 SUPERFAMILY LEA14-like 260 388 - -
Vvi5g1417 400 Pfam Late embryogenesis abundant protein 160 255 IPR004864 -
Vvi5g1417 400 Pfam Late embryogenesis abundant protein 286 380 IPR004864 -
Vvi5g1417 400 SMART why 139 256 IPR013990 GO:0009269
Vvi5g1417 400 SMART why 265 381 IPR013990 GO:0009269
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1417 - - - vvi:100266227 601.668
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004526 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 42