Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g142 ATGTTATTTAGAGGCAGTAGATTAAGACCATGTTTGGTCGGGGAAACCAGAGAAAATTTTTCATTCTTCAAGTTGACCTTCAGTCATTGCACTTCGTATTTTGCTTTAATTTATTTATGTTTGGTAGCAAAGGAAGGAGGAAAACGAAAGAAAATTTTCTATCTTACTTTTTCTATTGTTTGGATTGGAATGTGTGATTTGGAGGGAAGGCCGATGGAGAATCTTTTGGCTCTTTTTGACGCATTGATGCGGAATATATCACTCATGAAAGGGGAGAGCTGGAGGAGTGATGTTGGAAGAGAAGCTGCTGAATCGTTAGCAAAGGAAGCAAGGGGGAACAATTTGATGTTGACTTCTCCAGGCATTATAAATTCAAGGGGCTCTAGTAATTTTGCCTCTGTCTTCTCCAAGAAAGGAAAGAAAGGAGTGAATCAAGATTGCTTCATTGTGTGGGAGGAGTTTGGATGCCAAGAAGACATGACCTTTTGTGGGATTTTTGATGGGCATGGCTTGTGGGGGCACCATGTAGCCAAAAGGGTCAGGAAATTGATGCCATCATTTTTGTTATGCCATTGGCAAGAAACTCTTGCACTTGCTCAGGGTTTTGACATGATGGGACTTGATAGAAACCTTTGCCCATTTGATATATGGAGGCAATCCTACTTGAAAACTTGTGCTGCCATTGATGAGGAGCTCGAGCAGCATGCAGATCTTGATTCTTTTCGCAGTGGCACCACAGCTTTGACAATTGTTCGACAGGGAGAACTCATTATCATAGCAAATGTTGGTGATTCTCGGGCTGTGTTGGGAACCACGTCTGATGATGGCAGCCTGGTAGCAGTTCAACTTACTGTCGACTTTAAGCCCAATTTACCTCAGGAAGCTGAGCGAATAACTAAGTCCAGAGGGCAGGTATATTGCTTACAAGATGAACCAGGGGTGTACAGGGTTTGGATGCCAAATACAAAGACGCCAGGGCTAGCAATATCAAGAGCCTTTGGTGACTACTGCATGAAGGACTTTGGGGTTATTTCCGTGCCTGAAGTCACACAAAGAAATATAACCAGCAGAGACCAATTTGCCATTTTAGCCACAGATGGGGTATGGGATGTCATCTCTAACCAAGAGGCAGTTGAGATTGTTTCTTCAGCACCAGACCGAAACAAATCTGCTAAAAGGCTGGTGGAATGTGCAGTTGATGCATGGAAACGAAAGAAACGGGGTGTTGCAACGGATGACATCACAGCTATTTGCCTCTTCTTCCACCCTTCACCCTCCCAGCAAGGCAACAATGCTAAGGTCCTAGAAGAGGCTGGCATGACAAAAGCTGGGTAA 1335 43.9 MLFRGSRLRPCLVGETRENFSFFKLTFSHCTSYFALIYLCLVAKEGGKRKKIFYLTFSIVWIGMCDLEGRPMENLLALFDALMRNISLMKGESWRSDVGREAAESLAKEARGNNLMLTSPGIINSRGSSNFASVFSKKGKKGVNQDCFIVWEEFGCQEDMTFCGIFDGHGLWGHHVAKRVRKLMPSFLLCHWQETLALAQGFDMMGLDRNLCPFDIWRQSYLKTCAAIDEELEQHADLDSFRSGTTALTIVRQGELIIIANVGDSRAVLGTTSDDGSLVAVQLTVDFKPNLPQEAERITKSRGQVYCLQDEPGVYRVWMPNTKTPGLAISRAFGDYCMKDFGVISVPEVTQRNITSRDQFAILATDGVWDVISNQEAVEIVSSAPDRNKSAKRLVECAVDAWKRKKRGVATDDITAICLFFHPSPSQQGNNAKVLEEAGMTKAG* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1430323 1433336 - Vvi5g142 Vvi5g142 786284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g142 444 CDD PP2Cc 130 421 IPR001932 -
Vvi5g142 444 PANTHER ALPHABET, ISOFORM E-RELATED 72 430 - -
Vvi5g142 444 Gene3D - 123 423 IPR036457 -
Vvi5g142 444 Pfam Protein phosphatase 2C 155 396 IPR001932 -
Vvi5g142 444 SUPERFAMILY PP2C-like 122 423 IPR036457 -
Vvi5g142 444 ProSiteProfiles PPM-type phosphatase domain profile. 131 421 IPR001932 -
Vvi5g142 444 SMART PP2C_4 124 419 IPR001932 -
Vvi5g142 444 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 72 430 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g142 - - vvi:100256894 757.288