Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1420 ATGAAGTTGGACGTGGACGTCTTGCGATACCTTTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAAATGGGAATGAGGAATCATGAACTTGTACCTTCAGAGCTCGTGGTTCGCATAGCTTCTCTTAAGCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATATGATGGGTTTCGGCTTACTTACCTTGGATATGATTTTCTTGCAATAAAGACTCTGGTTAATCGTGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGATATATTTGAAGTTGCCAAGGAAGATGGCACAGTCTTGGCAATGAAGCTGCATAGGCTGGGTAGAACTTCTTTTAGGGCCGTAAAATCTAAGCGTGATTATTTGGGGCATCGGAATAATTATAATTGGCTCTATTTGTCACGGCTTGCTGCACTCAAAGAATTTGCCTTTATGAAGGCTTTGGAAGAACATGGTTTCCCTGTTCCAAATGCCGTGGACTGTAATAGACATTGTGTGGTTATGTCACTTGTCCAAGGTTATCCACTTGTGCAGGTGAAGCAATTGCAAAATCCTGACATAGTTTTTGAAACAATTATTGGTCTTGTTGTTCATCTGGCAGAACATGGCCTTATTCATTGTGACTTCAATGAATTCAACATTATGATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATGTACTTTGACCGTGATGTTGAGTGCATCTTCAAGTTTTTCAGCAAGAGGTTCAACCTGTCTTTCCAAGAGCACACAGATGAAATTGATGGTGACACCGAAGAATATGACAGGCCATGCTTTTCTTCAATAGAAAAATGTACTGGATTTCTAGACAAAGAACTTTCTGCTAGTGGATTTACTGGGAAGGATCAGGATGAAATTGAGAAGTTTATTGAAGAGGGAATTGAGAAAGATACTGGCTCTGAAGATGAAGGAATGGCTGATGAAGGACCCAATTCTGATGAGTTTGATGAGACAAACATCAAGGAATTTGATTCTTTGCAGTTGCTGGAACAGCCAGAAAGAGTGAATTGTGATGAGAAAGGCAAAGCAGAGGAGAGGCAACAATTTTGTGAAGCAGGTCAAAGCAGTGGACGAGAGACTCAAGACACGAGTGACAAGGAGGAAGCAAATGAGACTGGGAATGAAGATGATGCTGAGCTGATGCATCGCCTAAACAAGCAGAGACGGCGGGCTGTAGCAGCTGTGCATGGGAGACGGAAGACCCTTACATCTAGGAATTCTTACAAAGACAAGGGTGGTAAGTCCTCTCACAATTCCAAAATCCAGAAACAACTGAGTGGCTGGTGA 1404 42.02 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHELVPSELVVRIASLKHGGTYKVLKNLLKYKLLHHDSSKYDGFRLTYLGYDFLAIKTLVNRGVFVAVGRQIGVGKESDIFEVAKEDGTVLAMKLHRLGRTSFRAVKSKRDYLGHRNNYNWLYLSRLAALKEFAFMKALEEHGFPVPNAVDCNRHCVVMSLVQGYPLVQVKQLQNPDIVFETIIGLVVHLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHRNAQMYFDRDVECIFKFFSKRFNLSFQEHTDEIDGDTEEYDRPCFSSIEKCTGFLDKELSASGFTGKDQDEIEKFIEEGIEKDTGSEDEGMADEGPNSDEFDETNIKEFDSLQLLEQPERVNCDEKGKAEERQQFCEAGQSSGRETQDTSDKEEANETGNEDDAELMHRLNKQRRRAVAAVHGRRKTLTSRNSYKDKGGKSSHNSKIQKQLSGW* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24829435 24843846 + Vvi5g1420 Vvi5g1420 787562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1420 467 MobiDBLite consensus disorder prediction 335 352 - -
Vvi5g1420 467 CDD RIO2_C 94 274 IPR030484 GO:0004672
Vvi5g1420 467 SUPERFAMILY Winged helix DNA-binding domain 5 90 IPR036390 -
Vvi5g1420 467 SUPERFAMILY Protein kinase-like (PK-like) 95 272 IPR011009 -
Vvi5g1420 467 PANTHER SER/THR-PROTEIN KINASE RIO2 1 467 - -
Vvi5g1420 467 Pfam RIO1 family 106 280 - -
Vvi5g1420 467 MobiDBLite consensus disorder prediction 442 456 - -
Vvi5g1420 467 Gene3D Phosphorylase Kinase; domain 1 93 190 - -
Vvi5g1420 467 Gene3D Transferase(Phosphotransferase) domain 1 192 336 - -
Vvi5g1420 467 SMART rio_2 64 288 IPR000687 GO:0004674|GO:0005524
Vvi5g1420 467 MobiDBLite consensus disorder prediction 369 467 - -
Vvi5g1420 467 MobiDBLite consensus disorder prediction 332 356 - -
Vvi5g1420 467 PANTHER BNAA01G19540D PROTEIN 1 467 - -
Vvi5g1420 467 Gene3D - 4 91 IPR036388 -
Vvi5g1420 467 MobiDBLite consensus disorder prediction 372 386 - -
Vvi5g1420 467 Pfam Rio2, N-terminal 8 89 IPR015285 GO:0004674|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1420 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] - vvi:100259542 919.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .