Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1422 ATGCTCAACTTGCATTTCACCCAATTTCCCCCACAAACTAAAACCCAACCTTTTGAGGGTTGCCAATATAATCATCCCTCTGCGCCTCCCTATCAATATGGGCTCAGCATATTCAATGCCACCTATCAGACATGGCACCAAATGATGCCCAGTTCCATTCCGATGTTCTGCCACTGCGTCGCGCTTCCTTCATCAGGGAAGCTGCTCCTCCTGGGAGGTTGGGATCCCACCACCCTCGACCCGGTTCCCGATGTCTATGTGCTCAATTTAATTGGCGAAGACGGGGCGAGGTGGAGACGCGCAGCCCCAATGTCGGTGGCGCGATCTTTCTTTGCTTGTGCCGTGGTGGGACGCTCCACCGTGTATGTGGCCGGGGGGCACGACAGCCACAAAAACGCTCTGAGATCGGCGGAGGTTTACGACGCGGAGGCAGATGAGTGGAGGACGCTGCCATCCATGTGGGAGGAGAGGGACGAATCCCAGGGGCTGTCATGGGAGGGAGATTCCAGGTTTTGGGTGGTGAGTGGCTACAGCACAGAGAACCAAGGTCGGTTCCGCTCCGACGCAGAGTGCTACGACCCGGAAACTGGTTGTTGGTCCAAGGTGGAAGGGCTTTGGCCATTTCCAAGCAGCAGCCCCAGAGGTTGTGTGAGTGTCAACAGCGCCAGCGGCAGAGGACAATCTAAACACCAGTGGTGGCGGATCGCGGGAGAGGAGCAACAGCAGCAACAAACTGGGATAGGGGAAATAAGGGAGTACGAGAGGGAGGCGGAAAGGTGGAGAGTGCTTAGTTCGATTCCACTTCCACATCCAGAATTTGGGTTAGGCAGATCATCCAAGTGTCTCGTCAGTCTTGATGGAGGTGGGGATGGCAATAGTAGAAGAATGTTGGTGATGAGCAGTGGTGGGGAAGGGAAAGCAGGGGCCTTCATTTTGGAGAGGAATGATAAAGGGAAAACCAAGTGGAACCACATCCATGTTCCTCCCCAATTCACGGGGTTCCCATATGGTGATTACTTCAGCATCACTGTTGCTGGTTATCCAGAGGCCCACCCCAATGTGATAGAAAGAGATGGCGTGGCTAATTTGGAAGGATAA 1098 54.19 MLNLHFTQFPPQTKTQPFEGCQYNHPSAPPYQYGLSIFNATYQTWHQMMPSSIPMFCHCVALPSSGKLLLLGGWDPTTLDPVPDVYVLNLIGEDGARWRRAAPMSVARSFFACAVVGRSTVYVAGGHDSHKNALRSAEVYDAEADEWRTLPSMWEERDESQGLSWEGDSRFWVVSGYSTENQGRFRSDAECYDPETGCWSKVEGLWPFPSSSPRGCVSVNSASGRGQSKHQWWRIAGEEQQQQQTGIGEIREYEREAERWRVLSSIPLPHPEFGLGRSSKCLVSLDGGGDGNSRRMLVMSSGGEGKAGAFILERNDKGKTKWNHIHVPPQFTGFPYGDYFSITVAGYPEAHPNVIERDGVANLEG* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24864592 24868199 + Vvi5g1422 Vvi5g1422 787564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1422 365 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 20 333 - -
Vvi5g1422 365 SMART kelc_smart 120 167 IPR006652 GO:0005515
Vvi5g1422 365 SMART kelc_smart 67 118 IPR006652 GO:0005515
Vvi5g1422 365 Gene3D - 19 330 IPR015915 GO:0005515
Vvi5g1422 365 SUPERFAMILY Kelch motif 32 288 IPR015915 GO:0005515
Vvi5g1422 365 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP20 20 333 - -
Vvi5g1422 365 Pfam Kelch motif 112 153 IPR006652 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1422 - - - vvi:100250782 662.144
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1422 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1