Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1426 ATGTTGGACATTAGGGTTGGGCTCGTCCTCAAAGCCTGGAGACATGAGGAGGCCGATTCTCTATATGTTGAAGAGGTTGATGTTGGAGAGCCCGAACCTAGAATCATCTGCAGCGGCCTTGTCAAATATGTTCCTCTTGACCATCTTCAGGATAAAAAAGTAGTTGTCCTTGCCAATCTAAAACCAAGGAACATGCGTGGTGTCAAGTCATGTGGAATGCTTATGGCTGCTTCTGATGCATCACATGAGAATGTTGAGCTTCTTGTGCCTCCTGAAGGTTCAATTCCTGGTGAAAGAATATGGTTTGGCTCAGAAGATGAAAAGCAGAGTCAACCTGCTGCAGCCTCTCCAAACCAGGTTCAGAAGAAAAAGATATGGGAACTGGTGCAGCCCCATCTCAAAACCGATGCTTCTGGCATTGTGGTGCTTGGAGTACATTTGATGCGGACATCTGCAGGTGTGGTGGTGTCTAGATCTCTTAAAAACGCAAATATATCCTGA 501 45.91 MLDIRVGLVLKAWRHEEADSLYVEEVDVGEPEPRIICSGLVKYVPLDHLQDKKVVVLANLKPRNMRGVKSCGMLMAASDASHENVELLVPPEGSIPGERIWFGSEDEKQSQPAAASPNQVQKKKIWELVQPHLKTDASGIVVLGVHLMRTSAGVVVSRSLKNANIS* 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24892328 24902319 - Vvi5g1426 Vvi5g1426 787568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1426 166 ProSiteProfiles tRNA-binding domain profile. 1 101 IPR002547 GO:0000049
Vvi5g1426 166 Pfam Putative tRNA binding domain 4 98 IPR002547 GO:0000049
Vvi5g1426 166 CDD tRNA_bind_EMAP-II_like 1 101 - -
Vvi5g1426 166 Gene3D - 1 166 IPR012340 -
Vvi5g1426 166 PANTHER TYROSINE--TRNA LIGASE, CYTOPLASMIC 1 166 - -
Vvi5g1426 166 SUPERFAMILY Nucleic acid-binding proteins 2 165 IPR012340 -
Vvi5g1426 166 PANTHER TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER 1 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1426 - - - vvi:100245646 331.643
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006883 2 1 1 1 1 1 1 2 2 1 1 1 1 0 1 1 1 1 1 2 1 1 0 1 1 1 1 1 2 1 33