Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1427 ATGTTGAAGCGTTCGAGTAGGCAACACGAATCCCTCTCTGACAAGATCTACAGATTTCGAGGCGTAATCCTAGTGATCTCGATCCCACTGCTACTTATCTCCTTTGTTCTCTTCCTCATGCCCACCACCACGACTTCTCGCTCCGGTGCCTTCCAGCAATACCCCTTAGTCCACCGCAAGGCTTCTCCTCACTCCCAATCTAGGACCTACGCCGTCATCTTCGATGCGGGCAGTTCTGGCAGCCGTGTCCACGTTTTCTGCTTCGACAGCGATTTGAATCTTGTCCACATTGGAAAAGATCTCGAGCTCTTCTTGCAGAGAAAACCAGGTTTAAGCGCATATCCAACGGAACCCCAGCAAGCTGCAGAATCTCTGCTGCCCCTTCTAGATAAAGCTGAAAATGTTGTTCCAGCAGATTTGCGTCGCAAGACACCGGTCAAAGTTGGGGCAACTGCTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTGCAAGCGGTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACAGTTGGAGTGGTTGATCTTGGAGGTGGTTCTGTTCAAATGGCATATGCCATCTCAGAGACAGCTGCTGAAAAGGCTCCAAAGATCTCAGATGGAGAGGACACATATGTTAAGGAAATGTACCTCAAAGGAACAAAATACTTCCTCTATGTTCACAGTTATTTGCACTATGGTCTATTAGCAGCTCGAGCAGAGATTCTTAAGGTTGAAAGTTCTGAGAATCCATGCTTGTTGGGTGGTTTTCATGGGACATACACATATGGAGGAGTGACTTATGAAGCATCAGCTCACCCAAGCGGCTCAAGCATGGAAAGATGCAGGAGGGTGGCTTTTAGGGCTCTCAAAGTTAATGAATCAACATGTACCCACATGAAATGCACATTCGGTGGGATATGGAATGGAGGAGGGGGGGATGGACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAGGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATTTTGAGGATGCAGCCAAGCGAGTGTGCGAGACTAAACTTGAAGATGCCAAATCTAAATTTCCACTTGTGGAGGAGGCCAACCTGCCATACTTATGCATGGATCTCGTCTATCAGTTCACATTGCTAATAGATGGATTTGGCCTAGATCCCTGGCAAGAAATTACATTGGTGAAGCAGGTTAAATATGGCGATGCCCTTGTTGAAGCAGCATGGCCACTAGGGAGTGCCATTGATGCCGTGTCATCATTAACATAG 1416 46.4 MLKRSSRQHESLSDKIYRFRGVILVISIPLLLISFVLFLMPTTTTSRSGAFQQYPLVHRKASPHSQSRTYAVIFDAGSSGSRVHVFCFDSDLNLVHIGKDLELFLQRKPGLSAYPTEPQQAAESLLPLLDKAENVVPADLRRKTPVKVGATAGLRALGIDASDRILQAVKNFLKDKSTLKSKPEWVTVLDGSQEGAFQWVTINYLLGNLGRKYSHTVGVVDLGGGSVQMAYAISETAAEKAPKISDGEDTYVKEMYLKGTKYFLYVHSYLHYGLLAARAEILKVESSENPCLLGGFHGTYTYGGVTYEASAHPSGSSMERCRRVAFRALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFVDRNQPVAKVQPMDFEDAAKRVCETKLEDAKSKFPLVEEANLPYLCMDLVYQFTLLIDGFGLDPWQEITLVKQVKYGDALVEAAWPLGSAIDAVSSLT* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24919815 24925033 + Vvi5g1427 Vvi5g1427 787569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1427 471 Gene3D - 70 464 - -
Vvi5g1427 471 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 1 469 IPR000407 GO:0016787
Vvi5g1427 471 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 189 204 IPR000407 GO:0016787
Vvi5g1427 471 CDD NBD_sugar-kinase_HSP70_actin 72 231 - -
Vvi5g1427 471 Pfam GDA1/CD39 (nucleoside phosphatase) family 64 469 IPR000407 GO:0016787
Vvi5g1427 471 PANTHER APYRASE-LIKE PROTEIN 1 469 - -
Vvi5g1427 471 Gene3D Exopolyphosphatase. Domain 2 190 448 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1427 K14641 - vvi:100267968 919.072