Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1429 ATGAGAAAATCCGCGGCCATTATCAAACCAGGTGAGTACCTTCTTATTCTTCTCAAACCCTACTCCTCAATCGCTTCTCTCCCTCAAATACTATCCCTCGATTCCGAACCAGTGGATCTCTCTGCCCAACTCCTCTCTATTCTCTCTCGCCCAAATTGGCAGAAACACCCTTCTCTCAGAAAGCTTCTGCCTTCTCTAACCCCATCTCATGTCTCCTCTCTCTTCGCCTTCAATCTCGATCCCCAAACGGCCCTGAGCTTCTTCAATTGGATCGCCCTGCGACCTGGATTCAAACACAATGTTCATTCCTATTCCTCCATGTTAAACATTCTTATTCGAGCTCGATTGCTCGGTGTGGCTGAAAAGATTCGGATTTCAATGATCAAATCCTGCTGTTCTATTGAGGATGTACTATTTGTATTGGAAGTCTTTCGGAAAATGAATGCTGATGGTGAATTCAAATTTAAACCAACTCTTAGATGTTATAATACCATTTTGATGTCTTTGTCAAAGTTTCTTTTGATTGATGAAATGAAGACTGTTTATTTGGAGTTATTGAATAACCAGATTTCGCCTAATATATATACGTTTAACGCAATGGTTAATGGGTATTGCAAGATTGGAAATGTGGTTGAGGCAGAATTATACGCAAGTAAGATAGTGCAAGCGGGTTTACACCCCGACACATTTACATATACTTCTTTGATATTGGGGCACTGTAGGAATAAAGGTGTAGATAATGCTTATGAGGTGTTTTTGATTATGCCGCAAAAGGGTTGTCAAAGGAATGAGGTTTCCTATACTAATCTTATTCATGGGCTTTGTGAAGCTGGAAGGATTAATGAAGCTCTTAAGTTGTTTGCTGATATGACTGAGGATAATTGTTGTCCAACTGTGCGGACATATACAGTTCTAATATACGCATTGAGTGGATCAGGTAGGAAAGTAGAGGCATTAAATTTGTTTAATGAGATGAAGGAGAAAGGCTGTGAACCAAATGTTCACACTTACACTGTCCTCATTGATGGTCTATGTAAAGAAAATAAGATGGATGAAGCAAGAAAAATGCTAAGTGAGATGTCAGAGAAAGGATTGATTCCCAGTGTGGTAACATACAATGCTTTGATTGATGGGTATTGCAAGGAGGGAATGATTGATGATGCCTTTGAAATTTTGGATTTGATGGAATCAAATAGCTGTGGTCCAAACACTCGCACATACAATGAGTTGATATGTGGGCTTTGTAAGAAAAGAAAGGTGCACAAGGCAATGGCGCTACTCAATAAGATGCTTGAGCGCAAGCTGTCACCAAGCCTGATCACGTATAACTCTTTGATTCATGGGCAATGTAAAGTCAATGATTTAGAGAGTGCTTATAGGTTACTTAGTTTGATGAATGAAAATGGTTTGGTTCCTGACCAATGGACTTATTCTGTCTTCATAGATACCCTATGTAAAGAAGGGAGGGTTGAAGAAGCTGGTACCCTATTTGATTCTGTCAAGGCGAAAGGCGTAAAAGCAAATGAAGTGATATATACTGCTCTAATCGATGGCTATTGCAAAGTGGGGAAAATCGATGTTGCCTATTCTTTGCTTGAGAGAATGCTGAATGATGCATGCTTACCTAACTCGTACACTTACAACGTGTTGATAGAAGGGCTGTGCAAGGAGAAGAAGATGAAAGAAGCGTCATCATTAGTGGCAAAGATGTTAACAATGGGTGTGAAGCCCACAGTTGTTACTTATACAATTCTCATTGGAGAAATGTTGAAAGATGGTGCTTTTGACCATGCTCTTAAAGTTTTCAACCACATGGTCTCCTTGGGTTATCAGCCTGATGTTTGTACATACACAGCATTTCTTCATGCATATTTCAGTCAAGGGATGCTAGAAGAAGTGGATGATGTGATTGCCAAAATGAATGAAGAGGGCATTCTGCCAGATCTGGTGACTTACACTGTATTAATTGATGGGTATGCTCGTTTGGGTTTGACACATCGTGCTTTTGATTTTCTCAAATGCATGGTCGATACTGGATGCAAGCCCTCCCTTTATATTGTTTCCATTTTAATCAAGAATCTTTCACATGAAAATCGGATGAAAGAAACAAGATCTGAAATAGGTATTGATTCTGTTTCAAATACATTGGAATATGAAATTGCTCTAAAGCTCTTTGAGAAAATGGTTGAGCATGGTTGCACAATAGATGTCAGTATATATGGAGCACTAATTGCAGGATTTTGCCAACAGGAGCGATTGGAAGAAGCTCAGGGGTTAGTTCATCACATGAAAGAAAGAGGAATGTCCCCCAGTGAAGATATTTATAACTCTCTTCTTGACTGTTGCTGCAAGTTGGGGGTGTATGCTGAGGCAGTGAGGCTGGTGGATGCTATGGTAGAAAATGGTCTTTTACCACTTTTAGAGTCCTATAAGTTGCTTGTTTGTGGTTTGTACATAGAAGGCAGCAATGAAAAAGCCAAAGCAGTTTTCCATGGTCTGCTTTCTTGTGGGTATAACTATGATGAAGTAGCTTGGAAGGTTCTTATTGATGGCTTGCTTAAGAGGGACCTTGTTGACGAATGCTCTGAACTGATAGACATTATGGAGGAAAAGGGTTGCCAGCCTAATCCTCTAACATATTCATTGTTGATTGAGGGACTTGAAAGGACATAG 2673 39.88 MRKSAAIIKPGEYLLILLKPYSSIASLPQILSLDSEPVDLSAQLLSILSRPNWQKHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLERT* 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24942991 24946222 + Vvi5g1429 Vvi5g1429 787571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 612 IPR002885 -
Vvi5g1429 890 SUPERFAMILY HCP-like 191 443 - -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 841 875 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat family 736 783 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat family 437 486 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat family 367 416 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat family 263 309 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat family 508 556 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat family 841 887 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat family 612 661 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Vvi5g1429 890 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 839 - -
Vvi5g1429 890 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 839 888 - -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 706 837 IPR011990 GO:0005515
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 292 361 IPR011990 GO:0005515
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 571 639 IPR011990 GO:0005515
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 838 890 IPR011990 GO:0005515
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 362 432 IPR011990 GO:0005515
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 433 500 IPR011990 GO:0005515
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 501 570 IPR011990 GO:0005515
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 640 705 IPR011990 GO:0005515
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 128 291 IPR011990 GO:0005515
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 580 614 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 440 473 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 195 229 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 843 876 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 774 805 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 650 683 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 510 543 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 739 772 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 545 579 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 615 648 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 265 299 IPR002885 -
Vvi5g1429 890 TIGRFAM PPR: pentatricopeptide repeat domain 476 508 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat 573 606 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat 328 361 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat 224 252 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat 190 214 IPR002885 -
Vvi5g1429 890 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 17 839 - -
Vvi5g1429 890 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 839 888 - -
Vvi5g1429 890 Pfam PPR repeat 717 733 IPR002885 -
Vvi5g1429 890 Pfam PPR repeat 126 151 IPR002885 -
Vvi5g1429 890 Gene3D Tetratricopeptide repeat domain 58 127 IPR011990 GO:0005515
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Vvi5g1429 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1429 - - - vvi:100255912 1774.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .