Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g143 ATGCAATCGGAGCCGATGCCGTCGACGATATCGTCGTTCTTCAGCTTCCGCCAGAGCCCGGAGTCAACTCGGATTTTCGACGAGTTGCCCAAGGCCACAATCGTGTTCGTCTCTCGGCCCGATGCCAGCGACATCAGCCCCGCGCTGTTAACTTACACCATTGAATTCCGATATAAACAGGCAAGATCAGTTGCTGTTATTTTCCGATTTTATAAGTTCTTAATAACCCTCGGTTCAAATCACATTGACTTGATTAAAATTGATTTATTGAATAAGCTGATATCATGGCGGTTAATAAAGAAAGCTTCACAAGTATTCTTTTTACACTTTGCGTTAAAAAAACGAGTAATTATCGAGGAAATTCAAGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAACATAGGAATAGGAGAGCACACAGCAGTCGTGCATGATGATGATGAACCTGATGAGGAAACTGTTCCTTTACATCATGATGAAAGTGTTAAAAACAGAGATATTCCATCTAGTGCTGCTCTGCCAATCATTCGGCCAGCCCTGGGAAGGCAGAATTCTGTTTCTGATAGAGCAAAGGTTGCAATGCAAGGGTATCTTAATCTATTTCTTGGAAATTTGGATATAGTAAACTCCCGAGAGGTTTGCAAATTTTTGGAGGTTTCGAAGTTATCATTTTCTCCGGAATATGGCCCAAAGCTGAAAGAAGATTATGTGATGGTCAAGCATTTACCAAAAATTCCAAAGGAAGACGATACTAGAAAATGTTGCCCATGTCCTTGGTTCAGTTGTTGCAATGACAATTGGCAAAAGGTGTGGGCTGTATTGAAACCTGGATTCTTGGCCTTGCTGGAAGATCCTTTTCATCCTCAGCCTTTAGATATTATTGTTTTTGATCTGCTACCTGCCTCAGATGGAAATGGGGAGGGCCGGCTATCATTAGCAAAAGAAATAAAGGAAAGGAACCCTTTACGCCATGCATTAAAGGTGACATGCGGAAACCGGAGCATAAGGTTAAGAGCTAAGAGTAGTGCTAAAGTTAAAGACTGGGTTGCTGCAATTAATGATGCTGGACTTAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGCTTTGGCTCTTTTGCACCTCCAAGGGGTTTGAGTGAAGATGGTAGTCTAGCTCAATGGTTTGTCGATGGTCGAGCGGCATTTGAAGCGATTGCCTCCGCAATTGAGGAAGCAAAATCAGAGATATTTATTTGTGGCTGGTGGGTGTGCCCAGAACTGTATCTGAGGCGTCCATTTCACTCTCATGCTTCTTCTCGGCTTGATGCTTTACTGGAAGCAAAAGCTAAGCAAGGTGTTCAGATTTACATTCTTCTCTACAAAGAGGTTGCTCTTGCTTTGAAAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTAGGTGATCACCCTCCTTTGATGTGGCCAGGAAAAGACTATTACAACCCAAGGCAATTTAAATTAAGACTGTCTTTCCCTTGTAAACATATGGGTGACAAGCTCCATAGTTTGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTGAAAAGAAGAATGTTGAAAACAACTATAAAGACATTAAAAAACTGGATTCCTTTTCCTCTCGGTCATCTTTCCAAGATATCCCACTGCTTTTGCCTCAAGAGCCTGATGGATTGGATTCTCCCCATGGAGAATCAAAATTGAATGGGTTTGACTCCTCTAGTAATCTCCTTGATCAGCCAACTAGGGTCAGCAGAAGTCTTTCTTTCTCTTTTCGCAAGTCCAAAATTGAACCACCTGGAATGAGAACGTGTGATAGAGAGTGGTGGGAAACACAAGAGCGGGGGAATCAAGTTCTTTCTGCTGATGAAACTGGACAAGTTGGTCCTTGCGTTCCATGTCGTTGTCAGGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTATATATATTGAGAATCAATTTTTCATATCAGGTCTTTCAGGTGATGAGATAATACGCAATCGAGTATTAGAAGTGTTATACAGGCGTATTATGCAAGCATACAATGATAAGAAGTGTTTCAGAGTTATTATTGTCATACCACTCCTACCTGGCTTCCAGGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTTATGATGTTATTGGTCATAAAACACATGATTACATTTCTTTCTATGGTCTCAGAGCTTATGGTAGACTTTTTGATGGAGGTCCTGTGGCCTCTAGTCAGGTGTATGTGCATAGCAAAATCATGATAGTTGATGACTGCACAACCTTGATTGGATCCGCTAACATTAATGATAGGAGTTTGCTTGGATCAAGAGATTCTGAGATTGGCGTGCTCATTGAAGACAAGGAATTGGTTGATTCATATATGGGAGGAAAACCAAAGAAGGCTGGCAAATTTGCTCATAGTCTCCGCCTCTCACTGTGGTCAGAACACCTTGGTCTTCGAGGAGGAGAGATTGATCAAATAAAAGATCCAGTTGTTGATTCAACTTACAGAGATGTGTGGATGGCAACTGCAAAGACGAATTCCACAATCTACCAAGATGTCTTTTCTTGCATCCCAAACGATCTCATACATTCTAGAGCTGCAATGAGACAACATATGGCCATCTGGAAGGAGAAACTTGGCCACACCACCATTGATTTAGGAATAGCCCCTATGAAGCTAGAATCCTATGACAATGGAGACATGAAGACAATCGAACCCATGGAAAGATTAGAGTCGGTGAAGGGTCATCTTGTTTATTTCCCCTTAGATTTCATGTGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGCGAGTACTATGCCTCTCCTCAAGTCTTTCACTGA 3366 42.19 MQSEPMPSTISSFFSFRQSPESTRIFDELPKATIVFVSRPDASDISPALLTYTIEFRYKQARSVAVIFRFYKFLITLGSNHIDLIKIDLLNKLISWRLIKKASQVFFLHFALKKRVIIEEIQEKQEQVKEWLQNIGIGEHTAVVHDDDEPDEETVPLHHDESVKNRDIPSSAALPIIRPALGRQNSVSDRAKVAMQGYLNLFLGNLDIVNSREVCKFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDTRKCCPCPWFSCCNDNWQKVWAVLKPGFLALLEDPFHPQPLDIIVFDLLPASDGNGEGRLSLAKEIKERNPLRHALKVTCGNRSIRLRAKSSAKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLSEDGSLAQWFVDGRAAFEAIASAIEEAKSEIFICGWWVCPELYLRRPFHSHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTLEHKVGDHPPLMWPGKDYYNPRQFKLRLSFPCKHMGDKLHSLESEPNSWEDTMKDELDRGKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPQQHMVIPHYMGRSREMEVEKKNVENNYKDIKKLDSFSSRSSFQDIPLLLPQEPDGLDSPHGESKLNGFDSSSNLLDQPTRVSRSLSFSFRKSKIEPPGMRTCDREWWETQERGNQVLSADETGQVGPCVPCRCQVIRSVSQWSAGTSQVEDSTHNAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLEVLYRRIMQAYNDKKCFRVIIVIPLLPGFQGGLDDGGAASVRAIMHWQYRTICRGNNSILQNLYDVIGHKTHDYISFYGLRAYGRLFDGGPVASSQVYVHSKIMIVDDCTTLIGSANINDRSLLGSRDSEIGVLIEDKELVDSYMGGKPKKAGKFAHSLRLSLWSEHLGLRGGEIDQIKDPVVDSTYRDVWMATAKTNSTIYQDVFSCIPNDLIHSRAAMRQHMAIWKEKLGHTTIDLGIAPMKLESYDNGDMKTIEPMERLESVKGHLVYFPLDFMCKEDLRPVFNESEYYASPQVFH* 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1434326 1452682 - Vvi5g143 Vvi5g143 786285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g143 1121 Pfam Phospholipase D Active site motif 493 520 IPR001736 GO:0003824
Vvi5g143 1121 Gene3D Endonuclease Chain A 381 640 - -
Vvi5g143 1121 SUPERFAMILY PH domain-like 264 356 - -
Vvi5g143 1121 Coils Coil 114 134 - -
Vvi5g143 1121 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 917 944 IPR001736 GO:0003824
Vvi5g143 1121 Coils Coil 645 665 - -
Vvi5g143 1121 Gene3D - 262 358 IPR011993 -
Vvi5g143 1121 PANTHER PHOSPHOLIPASE D 14 62 IPR015679 -
Vvi5g143 1121 PANTHER PHOSPHOLIPASE D 85 1118 IPR015679 -
Vvi5g143 1121 MobiDBLite consensus disorder prediction 683 705 - -
Vvi5g143 1121 CDD PH_PLD 209 356 - -
Vvi5g143 1121 Pfam PLD-like domain 790 966 IPR025202 -
Vvi5g143 1121 SMART pld_4 493 520 IPR001736 GO:0003824
Vvi5g143 1121 SMART pld_4 917 944 IPR001736 GO:0003824
Vvi5g143 1121 PANTHER PHOSPHOLIPASE 14 62 - -
Vvi5g143 1121 PANTHER PHOSPHOLIPASE 85 1118 - -
Vvi5g143 1121 SMART PH_update 232 360 IPR001849 -
Vvi5g143 1121 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 493 520 IPR001736 GO:0003824
Vvi5g143 1121 ProSiteProfiles PH domain profile. 267 358 IPR001849 -
Vvi5g143 1121 Gene3D Endonuclease Chain A 743 979 - -
Vvi5g143 1121 CDD PLDc_vPLD1_2_yPLD_like_2 777 961 - -
Vvi5g143 1121 PIRSF PLD_euk 8 1121 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vvi5g143 1121 SUPERFAMILY Phospholipase D/nuclease 756 967 - -
Vvi5g143 1121 CDD PLDc_vPLD1_2_yPLD_like_1 386 531 - -
Vvi5g143 1121 SUPERFAMILY Phospholipase D/nuclease 345 633 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g143 K01115 - vvi:100261987 2123.98