Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1432 ATGGAACTTGGTACAACCATATGCACTCCACTAAACCCAAGCTGCTCTGCATGTCCAGTCTCAGACCAATGCTCTGCACTATCAATGTCTGAAAGCCATATATCTATATTTGTTATAGATTATCCTGTCAAAGTTATTAAGGCCAAAAAAAGACATGATTTTTCTGTTGTTTCTGTTGTGAAGATATTGGAAGAGCAAGATATATCAAAGGGATCCCAATATAACAGTAGATTTCTTCTGGTAAAAAGACCTAATAAAGGTTTGCTTGTTGACCTCTGGGAGTTCCCATCTGTCCTATTAGATGGAGAGACTGACAGGGCCACAAGGAGAAAAACAATTGATCACTTTTTGAAGTCATTCAAGCTTGATACTGAAAAGAACTGTAGCATCGTTTCAAGGGAAGATGTTGGGGAATGTGTCCATGTGTTCACCCACATTCATCTTAAGATGTATGCGGAGTTGTTAGTTCTGCATCTAAAAGGTGGGATGAAAATCTCATATGAAAATGAGGACAAAGAAACTATGACTTGGAGATGGATTGATAGTGAGGCCTTTCAAGCATGGGATTAA 570 38.6 MELGTTICTPLNPSCSACPVSDQCSALSMSESHISIFVIDYPVKVIKAKKRHDFSVVSVVKILEEQDISKGSQYNSRFLLVKRPNKGLLVDLWEFPSVLLDGETDRATRRKTIDHFLKSFKLDTEKNCSIVSREDVGECVHVFTHIHLKMYAELLVLHLKGGMKISYENEDKETMTWRWIDSEAFQAWD* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24978595 24980036 - Vvi5g1432 Vvi5g1432 787574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1432 189 Pfam NUDIX domain 76 186 IPR029119 -
Vvi5g1432 189 SUPERFAMILY Nudix 42 187 IPR015797 -
Vvi5g1432 189 SUPERFAMILY DNA-glycosylase 1 26 IPR011257 GO:0003824|GO:0006281
Vvi5g1432 189 CDD DNA_Glycosylase_C 77 188 IPR029119 -
Vvi5g1432 189 Pfam Iron-sulfur binding domain of endonuclease III 8 24 IPR003651 GO:0051539
Vvi5g1432 189 SMART ccc3 7 27 IPR003651 GO:0051539
Vvi5g1432 189 PANTHER ADENINE DNA GLYCOSYLASE 1 186 IPR044298 GO:0006284|GO:0016798
Vvi5g1432 189 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 47 188 - -
Vvi5g1432 189 Gene3D - 1 36 IPR023170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1432 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] - vvi:100265491 335.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .