Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g147 ATGAACTCCAATTACGGAAAAACCACTAACTCCCAAAGAGGAGGAGGATCCGTTCCCCTCAACAACTACCAGTTCGATTTCGGACTCGGATCCAGCCGTTCCCGCCCTCTTAACGACCAGAAGCAGCAGTCTTCTCATTCTTCTTCATTTTCTGCGCCGCAATCCCACCCCTGGCAACCCAACAAGCCCTCATGGACTCACCAGCCCGCACCGACTCAGACGACTCGCTCCGGCCCTTCTGGTATTGGAATTGTGGATAAAAACCCGAATTTGTTTGGAGACCTCGTGGGCTCCGCTCTAGGTAAGGTTAATAGTAATGTTCCTCTGAAAAATAGCACGCCGGTGTCAGCACAATCGACTAAGAGCCCATATTCAATGGGGAATTTGGCAGATTCATTGCCGAAAACTGGCAATTCAGCGAAAAGTGGTGGGAATTGGGGGAATTCGGAGAATTTTGGGGGTTATTCTAGTGGATACAACAATAGTAGTGGGGTGGGGATGACTTCCAAAAAAGACCCATTTGGTTCTTTGGTTGATTTTGGATCAAAACCAATGGGTAGTCTTAATTCAGCAAGTAAGGGTAGTAAGGTTAATTCAAGGGATGAGGCATTCGGAGATTTTCAGAATGCTCCAAAATCAAGTGCATCTGCCTTTCCATCAAGTTCCTTTCCTACCAATAATAGCAATTCCATGGGATCAAGTTCAGGTTTTGATCCGAAGATGGACAGCTTTGGCATTCCCACCCAGGATTTTGGTTCTCAGAATCAGCCTCCTGTTCAGACCTCCAATGTTGATCCGCTAGACATGTTGTTTGCCTCTTCAGCTTCTGCTGGAACGGGTCCAACAGGGTCAGAAAGAGTTGGAGAGCAGCAGTTTTCTGAAGGTGATGATTGGGGGTTGGATTCGGACTTTGGAGGAGGACATGACAATGGCGGTACCACCACTGAGCTTGAAGGTCTGCCTCCCCCGCCTGCTGGGGTTACAGCTGCCTCTGCAAAGAGCAAGGGACTGGATAATCACAAGCAGGGGCAATATGCTGATGCAATTAAGTGGCTTTCTTGGGCTGTAGTTCTTCTTGAGAAAGCTGGCGATGATGCTGGCACCATGGAGGTCTTAACATGCCGAGCTTCATGTTATAAAGAAGTAGGGGAGTATAAGAAAGCAGTGGCTGACTGTAGTAAGGTGCTAGAACACGATGAAAAGAATGTATCTGTCCTTGTACAGAGAGCACTTCTCTATGAGAGTATAGAGAAGTACAAACTTGGGGCAGAAGACCTGAGGACTGTTTTGAAATTTGATCCTGGTAACAGGGTTGCAAGAAGTACCATTCACCGCTTGACTAAAATGGCTGCGTAG 1356 47.42 MNSNYGKTTNSQRGGGSVPLNNYQFDFGLGSSRSRPLNDQKQQSSHSSSFSAPQSHPWQPNKPSWTHQPAPTQTTRSGPSGIGIVDKNPNLFGDLVGSALGKVNSNVPLKNSTPVSAQSTKSPYSMGNLADSLPKTGNSAKSGGNWGNSENFGGYSSGYNNSSGVGMTSKKDPFGSLVDFGSKPMGSLNSASKGSKVNSRDEAFGDFQNAPKSSASAFPSSSFPTNNSNSMGSSSGFDPKMDSFGIPTQDFGSQNQPPVQTSNVDPLDMLFASSASAGTGPTGSERVGEQQFSEGDDWGLDSDFGGGHDNGGTTTELEGLPPPPAGVTAASAKSKGLDNHKQGQYADAIKWLSWAVVLLEKAGDDAGTMEVLTCRASCYKEVGEYKKAVADCSKVLEHDEKNVSVLVQRALLYESIEKYKLGAEDLRTVLKFDPGNRVARSTIHRLTKMAA* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1469776 1472603 - Vvi5g147 Vvi5g147 786289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g147 451 MobiDBLite consensus disorder prediction 247 289 - -
Vvi5g147 451 SMART tpr_5 403 436 IPR019734 GO:0005515
Vvi5g147 451 SMART tpr_5 329 362 IPR019734 GO:0005515
Vvi5g147 451 SMART tpr_5 369 402 IPR019734 GO:0005515
Vvi5g147 451 MobiDBLite consensus disorder prediction 209 237 - -
Vvi5g147 451 MobiDBLite consensus disorder prediction 1 85 - -
Vvi5g147 451 MobiDBLite consensus disorder prediction 185 331 - -
Vvi5g147 451 MobiDBLite consensus disorder prediction 1 81 - -
Vvi5g147 451 Gene3D Tetratricopeptide repeat domain 327 451 IPR011990 GO:0005515
Vvi5g147 451 SUPERFAMILY TPR-like 332 443 IPR011990 GO:0005515
Vvi5g147 451 PANTHER OS03G0340700 PROTEIN 76 450 - -
Vvi5g147 451 PANTHER OS03G0340700 PROTEIN 1 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g147 - - - vvi:100255130 788.875
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g147 . . . . . . . . . . Cma06g01542 Cma14g01607 . Car14g01426 . Cpe08g00170 Cpe03g01349 . . . . . . . . . . . . . . . . Cone7ag0129 Cone4ag0134 . . . . . . . Bda13g00198 . . Bma02g00918 . . . Cmo14g01643 . . . . . . . . . . . . . . . . . . . . . Csa03g01491 Chy06g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008564 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34