Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g149 ATGTTACTTCTCTTATTTGAAATCATCACCCAAAGTGGCACCTTTTCCGCTGAATCACCCGAAAATGATCCGGCACCTGATGCTGCAATGATATTTGATGTTACCATGTATGGAGCAGTGGGAGATGGTAAGACAGAGAATGGCATGGCATTCTTAGCAGCATGGGATGATGCATGCAATCATCCTGGAAAATCCACTTTATTAGTACCCAATGGGACATTCTTCATTGGCCCAATCTCATTTATTGGCCCTTGTCAAAACAATCAATCCCCAAAGGTAGAGATCAGAGGGACTTTGAAGGCTCCTTCCAGCCTCAAGGCCTTCCCCACACCCTCCTGGATTATGTTCCGACAATTGCAGAGCCTGATTCTCACTGGAGAAACCACAACAAACACATCTTTGTTTGATGCCCAAGGAGAAGAATCATGGAGACATGCCGATTGCAGACACAAACTAAAATGCCAGTTCCCTACATCAATAATATTGGTCAATGTTACAAATGGGAATATCAGCAACATCACTCTAAAGAATGGCAAGGGATTCCATATGGGCATCATAAACAGTGACAATGTCACTGTCCATGGCGTCAACATTACAGCCCCCTGGAACAGCCCCAACACCGATGGCGTCCACATCGGTTACTCCACCAACATCCACATCACTTCTTCCACAATTGGAGTCGGAGATGACTGCGTCTCCATTGGACCCGGCAGCATCAACATAACTGTTTTCAACACCAAATGTGGCCCAGGTCATGGTATCAGTGTGGGGAGCCTAGGCAAATACTCAGCTGAGAAGGATGTGGTGGGAGTCAGAGTGAAGAACTGTACAATCAATGGCACCCAAAATGGGGTCAGGATCAAAACATGGCCCGGATCTCCGGCAAGCAAGGCGTCTAGTTTTTGGTTTGAGGACATTGTAATGATCAATGTCTCAAACCCCATAATCATAGATCAAGAGTACTGTCCCTGGTCTACCTGCACCAGCTCCAAACCCTCGCTTGTGAAGCTCAGTGACATTCATTTCACGAACATCAGGGGCACTTTTAATACCAAGTCTGCAGTAGCTTTGATGTGCAGTTCTAGTGTTCCTTGCGAGGATATACAGCTTCTTAACATTAATCTGACCCACACAATGGCAAGCAGCCTTCAAGGAGGAGGTCACTTGAGTGTGAAGGGTGCTCTTCATCGTCTAGAAATTAATGGTTCTAGCTTCTGA 1218 45.98 MLLLLFEIITQSGTFSAESPENDPAPDAAMIFDVTMYGAVGDGKTENGMAFLAAWDDACNHPGKSTLLVPNGTFFIGPISFIGPCQNNQSPKVEIRGTLKAPSSLKAFPTPSWIMFRQLQSLILTGETTTNTSLFDAQGEESWRHADCRHKLKCQFPTSIILVNVTNGNISNITLKNGKGFHMGIINSDNVTVHGVNITAPWNSPNTDGVHIGYSTNIHITSSTIGVGDDCVSIGPGSINITVFNTKCGPGHGISVGSLGKYSAEKDVVGVRVKNCTINGTQNGVRIKTWPGSPASKASSFWFEDIVMINVSNPIIIDQEYCPWSTCTSSKPSLVKLSDIHFTNIRGTFNTKSAVALMCSSSVPCEDIQLLNINLTHTMASSLQGGGHLSVKGALHRLEINGSSF* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1477610 1481214 - Vvi5g149 Vvi5g149 786291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g149 405 PANTHER EXOPOLYGALACTURONASE-LIKE 23 377 - -
Vvi5g149 405 Gene3D - 19 393 IPR012334 -
Vvi5g149 405 Pfam Glycosyl hydrolases family 28 59 378 IPR000743 GO:0004650|GO:0005975
Vvi5g149 405 ProSitePatterns Polygalacturonase active site. 245 258 IPR000743 GO:0004650|GO:0005975
Vvi5g149 405 SUPERFAMILY Pectin lyase-like 28 377 IPR011050 -
Vvi5g149 405 PANTHER - 23 377 - -
Vvi5g149 405 SMART pbh1 337 359 IPR006626 -
Vvi5g149 405 SMART pbh1 188 214 IPR006626 -
Vvi5g149 405 SMART pbh1 215 236 IPR006626 -
Vvi5g149 405 SMART pbh1 268 289 IPR006626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g149 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - vvi:100243117 807.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g149 Vvi7g329 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013780 0 1 0 0 0 1 2 1 1 1 0 1 1 1 0 2 1 0 1 1 0 1 1 1 1 1 2 0 1 1 24