Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g153 ATGGGATACAACAATGCCGCAGACGCAGATTCACGAGGAAAGAAAAAAGTTGCCCTTATGGGGTTTTCTTCTATACTCTTGGTGGCAATGGTGGTGGGAACTGTTGCAGGAGGCGGCATATCCACGTCCGTGAAAGCCATTCAGGCCATTTGCCAGCCCACTGATTACAAAGAAGCTTGTGTAAACAGCCTGACTTCAGCGAAGGCCAACACATCTGACCCCAAGGAACTGGTGAGGACAGCGTTCCAGGTGGCCATAAACCAGATTAGCTCCGCGCTTCAGAACTCTACTACATTGAGGGACTTGGAGAAGGATCCAAGAACCAAAGGGGCTCTTGAGAATTGCCATGAGCTCATGGACTACGCCATTGATGATCTCAGGAACTCCTTCAACAAGTTGGGGGTCTTTGATATCAGCAAAATCGATGATTATGTGGAGGATCTCAAAATCTGGCTGAGTGGGGCCCTCACCTACCAAGAAACCTGCCTGGATGGCTTCGAGAACACTACCGGCGATGCTGGAGAGAAGATGAAGGCTCTTCTCAAGAGCGCAGGAGAGCTCACCAGCAATGGCCTTGCTATGATTGATGAGATCTCGTCGGTGCTCACCAATTTGCAAATTCCGGGGATTAGCCGCAGGCTCCTCGTTGGGCAACGTAAACTCTTTCAGGCTACACCAGACACCATTAAACCCAATGTGATAGTGGCTCAAGATGGTTCCGGAAAATATAAGACCATCAATGAAGCCCTGGTTGAAATTCCCAAGAATGGCAACACCACATTTGTGCTGTATGTCAAAGAGGGTGTGTATAAGGAGCAGGTGAACTTCACAAAGAGCATGACCAACGTTATGCTAATTGGTGACGGCCCTACCAAAACTACTATCTCTGGAAGCTTGAATTTCATAGATGGAATCGGCACATTCAGGACAGCAACAGTTGCTGCGGTTGGGAGTAATTTCATGGCCAAGGACATAGGATTTGAGAACAATGCAGGAGCTTCCAAGCACCAAGCTGTGGCACTGCGGGTGGGATCCGACATGGCCATCTTTTACAACTGCCGGATGGACGGATACCAAGACACCCTCTACGTACACGCCCACCGTCAATTCTACCGGGACTGCACCATCACGGGGACCATCGACTTCATTTTTGGAGACTCGGCGGTGGTCTTCCAGAACTGCTTGATACTGGTGAGGAAGCCGCTAGACAACCAGCAATGCATCGTGACAGCTCAGGGAAGAAATGAGAGGCGTGAGCCCACTGGAATTGTCCTCCAGAACTGCACCATCTCCGCTGCTGATGACTACATTCCTTTCAAAACCAAGTTCAAATCTTACCTCGGGAGGCCCTGGAAGGCCTTCTCAAGAACCATAATCATGCAGTCACAGATCGATGATTTGATCAGCCCAGAGGGGTGGCTGCCATGGATGGGTGACTTTGGACTCAACACTTGCTTCTACGCAGAGTATGGAAACAGGGGTCCTGCCTCAGCCACCACTAGCAGGGTTACATGGCGAGGCATCAAGCAGATTACTGGTCAACATGTCAACGATTTCACGGTCGGAAGGTTCATTTCCGGCCATCTGTGGCTTGGGGCCTCTGGGGTGCCCTACACTTCTGACATGATGGCTGTAATGGAAGATCAGATTCACTCTGCGGAAGACCTGAGCGGTGACAGAAACGCCAGTTTCCACACCGTGCAGCCTCTCCGTGACCTCGAATCGAATTGGTCCGTGGATCTTGCCAAGAACCTTGAAGAGTATCTGCTCAAGATTTGCTCCGGTGAGATTTCCGGAAACGACGGCAGGAACGTGAATTTTGCTGAAGCTGCTTTGCTGCTTCAAGGTTCAATTCAGGTGTATAGTCGGAAGGTGGAATATCTTTATACACTGGTTTTACATGCTTTGGAGTTCGTTTCACATACAAGAGGAAAATTAAAGGGCCCTGCCACTTGCCGGATGGAGGGGATAAAGGTTGAGAGAGAGGTTCATACTCTAACCATCGTGGAGACAGTACCATGCTCCACATATTGTTTGTTTGCACCAGCAACATGTGGTGCACCCTGCAAAATCTATCCTCATTTGCTGCTTAAGCAGCAGGATCAACTAGAGAGAACACCCATCCAGCATGAGGAAGGTGGCTCCCATGTGGTACCTGATGAAGAAGATGATCTGTTTTGGTGTTTAGATGATGTACCTGTTGAACCAAGGAATTGCCTAGATAGTACCACCAGCAAAGATGCTTCCTTGAACCAGTTTGTGAAAGCTCCTGCCAATCTAGTTGTACTTGAAGGTGACGCTACTGGTGATGGCGGGGAATTAGATTCATATTTGTTAGCCACCAACGATCTTTATCGGGATTTTATTCTCTTAGATCCGTGTGATGCTGTAGCAGTTGACAGTTTTCTGAAAGGAGATAAAGATTCTAAAGGGCTGAATGGTGACTATAAGAGCGGCTCTTTAAACTCTAAGAGTTGCAAGAGCTTTCAGTCCCCCTCTAGACGTTCTGGAGGAACTGCTCATAGATCTCATGGAAAGAGCAATCTTAATGAACCTTGGGTTGATTGCAGCTTTGCAGCTAATGAGGGTAAAATTGGGCCTGAGCCACCTGCTTTTGACATTGCCGAAAACAATGATGGACATACAGATCATGCAGGATTAGATAATTCAGATGATGATGACGACGATGATGACAACGATGATCCATGGAAACCATTGAATCCACATGAAGCTGGGAACTTGAAAGTAAAACCTTTTAAAAAAGTGAAGGCTTTCAGAAGGCATGGGGTATGTTCTACTAAGCATAATATTCTTACTACTCAGTTTCCCCTTGCAAAAATGCATGGTCCTATTAGTCCAGAGCTCACAGAAATATGGGAGAAACATCGTGCTTGTGAAAGACAACAAGAACCTCAAACTCCTCCACTTTATGAGAAGCTGCGAAACTCACTTATTCATGGAGATTCTCAGACTTTTAGTGCTTATAGTAATGTTGAGGACAACAAAGAAGATGGTGGATATGATAGTGGGGTTAATGATTTTGGGGATGAGATGCCGCATGATATGTACATGGATGATGATTTACCTCTTCATCAAGAACAGGTGAGGCTACCAGTGCTTATGTGTCAAGAACAAAATATTATGCACCATGATGATGGTGCTGCATGTTTTGATTCCATTGACAACTTGGAAGACCTTTGTCGCTCTCATCTTGATGCTCTCCTTGCCAACATTGCTGAAACTGAGAAGCAGACTGAATTGGCTGCTCGGGTTTCAACATGGAAACAAAAGATAGAGCATGACTTGGAAGAACAAGACTTGCGACCTCCATTTGATATTCATGATTATGGAGACAGAATTTTGGAAAAATTATCCCACAAAGCTGAAAATGGAAATGTCATGTCCTTTAGTGAAGTTGTCAGTGGCCAAGAAAAGCACGATGTGGCACGATCCTTTTCTGCACTCCTTCAACTGGTGAACAATGAAGATGTCAATCTGGATAGGGGTGGAACTGATGGTGAGTCCGTGTGTTACACAGATGCAAATCCTTTCTATATTAAGCTCCTTAACCGTGACAAGAGACGGGAGGAAGTGCAGCTCCGTTCAACCAAGAAGAGAGCTAAATCTCCAACAAAGAAAGAATGCACCAAGGGCAAGAGGGACAAATCAGAAATAGAGAACCGTCCACCTGTTAGTTCATCGTCAACAACAGCACTTCAACCCCAACCAAATTGCAAATTCTCTGTGAAACTCGGAAAAATTAATCCCATTCGATGCACTCCTGAACGCAAGAGGAGGCGAAGGTCTCGGATTGCTGAACCGGTTGACTTACATTCTTCAAGATGA 3846 46.44 MGYNNAADADSRGKKKVALMGFSSILLVAMVVGTVAGGGISTSVKAIQAICQPTDYKEACVNSLTSAKANTSDPKELVRTAFQVAINQISSALQNSTTLRDLEKDPRTKGALENCHELMDYAIDDLRNSFNKLGVFDISKIDDYVEDLKIWLSGALTYQETCLDGFENTTGDAGEKMKALLKSAGELTSNGLAMIDEISSVLTNLQIPGISRRLLVGQRKLFQATPDTIKPNVIVAQDGSGKYKTINEALVEIPKNGNTTFVLYVKEGVYKEQVNFTKSMTNVMLIGDGPTKTTISGSLNFIDGIGTFRTATVAAVGSNFMAKDIGFENNAGASKHQAVALRVGSDMAIFYNCRMDGYQDTLYVHAHRQFYRDCTITGTIDFIFGDSAVVFQNCLILVRKPLDNQQCIVTAQGRNERREPTGIVLQNCTISAADDYIPFKTKFKSYLGRPWKAFSRTIIMQSQIDDLISPEGWLPWMGDFGLNTCFYAEYGNRGPASATTSRVTWRGIKQITGQHVNDFTVGRFISGHLWLGASGVPYTSDMMAVMEDQIHSAEDLSGDRNASFHTVQPLRDLESNWSVDLAKNLEEYLLKICSGEISGNDGRNVNFAEAALLLQGSIQVYSRKVEYLYTLVLHALEFVSHTRGKLKGPATCRMEGIKVEREVHTLTIVETVPCSTYCLFAPATCGAPCKIYPHLLLKQQDQLERTPIQHEEGGSHVVPDEEDDLFWCLDDVPVEPRNCLDSTTSKDASLNQFVKAPANLVVLEGDATGDGGELDSYLLATNDLYRDFILLDPCDAVAVDSFLKGDKDSKGLNGDYKSGSLNSKSCKSFQSPSRRSGGTAHRSHGKSNLNEPWVDCSFAANEGKIGPEPPAFDIAENNDGHTDHAGLDNSDDDDDDDDNDDPWKPLNPHEAGNLKVKPFKKVKAFRRHGVCSTKHNILTTQFPLAKMHGPISPELTEIWEKHRACERQQEPQTPPLYEKLRNSLIHGDSQTFSAYSNVEDNKEDGGYDSGVNDFGDEMPHDMYMDDDLPLHQEQVRLPVLMCQEQNIMHHDDGAACFDSIDNLEDLCRSHLDALLANIAETEKQTELAARVSTWKQKIEHDLEEQDLRPPFDIHDYGDRILEKLSHKAENGNVMSFSEVVSGQEKHDVARSFSALLQLVNNEDVNLDRGGTDGESVCYTDANPFYIKLLNRDKRREEVQLRSTKKRAKSPTKKECTKGKRDKSEIENRPPVSSSSTTALQPQPNCKFSVKLGKINPIRCTPERKRRRRSRIAEPVDLHSSR* 1282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1527456 1537313 + Vvi5g153 Vvi5g153 786295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g153 1281 Pfam Plant invertase/pectin methylesterase inhibitor 46 194 IPR006501 GO:0004857
Vvi5g153 1281 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 199 IPR035513 -
Vvi5g153 1281 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 902 1198 IPR031737 -
Vvi5g153 1281 MobiDBLite consensus disorder prediction 823 848 - -
Vvi5g153 1281 MobiDBLite consensus disorder prediction 1197 1281 - -
Vvi5g153 1281 MobiDBLite consensus disorder prediction 823 846 - -
Vvi5g153 1281 CDD PMEI-like_3 49 200 - -
Vvi5g153 1281 Gene3D - 226 542 IPR012334 -
Vvi5g153 1281 PANTHER PECTINESTERASE 21 576 - -
Vvi5g153 1281 SUPERFAMILY Pectin lyase-like 229 540 IPR011050 -
Vvi5g153 1281 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Vvi5g153 1281 SMART PMEI_2 42 194 IPR006501 GO:0004857
Vvi5g153 1281 Coils Coil 1186 1206 - -
Vvi5g153 1281 MobiDBLite consensus disorder prediction 865 912 - -
Vvi5g153 1281 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 564 645 IPR009378 -
Vvi5g153 1281 Pfam Pectinesterase 232 527 IPR000070 GO:0030599|GO:0042545
Vvi5g153 1281 PANTHER PECTINESTERASE 21 576 - -
Vvi5g153 1281 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 755 898 IPR031719 -
Vvi5g153 1281 MobiDBLite consensus disorder prediction 1228 1244 - -
Vvi5g153 1281 MobiDBLite consensus disorder prediction 1266 1281 - -
Vvi5g153 1281 Gene3D Structural maintenance of chromosome 1. Chain E 1112 1171 IPR023093 -
Vvi5g153 1281 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 197 IPR006501 GO:0004857
Vvi5g153 1281 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 199 IPR035513 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g153 K01051 K11490 vvi:100241388 1289.63