Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g162 ATGGCTATTCAAATGCACCTATGCGTAGCCGTGGCACTCTTGGCTTCCTCCTCTTTCTTCACAGCCTCCACTTCTGGCCTCGCACAATCAGGAACATTATCTTGGTTTCTTTTTCAAGGTACGAGTGTTTTCGTTTCATGTTTTGCAGATGAAGTACCGAAACCGAGTTTTGCTTTCAGTTGGTTAGACGATCTTAATACATTTGAAGCCGGTGGGATTGCAACCATAAAGATCAAAGTACTTGGAGACTTTGACAGTAGAGGGAATGGTTCCCTTGATGAACGTGCTTTTAATCCAACACTCACTATAAATGGGAAGATGGGAAATAGTTCCTATATTTCCGGAGTTTCTTCAAATCTCGAGGGTGATTCTAGTAATTGGAGAATTTCATTCACTCCAATCATGGCTGGGGTATTTAATGTGATTATCAGCGACAAACATTTCGGAATCTTAGATTCATCTCTTCATTTTGAAGTGCTGGAAGGGCATTTATACCCATCTGTTTGTGTTGCTTCATGGATGAGTCCTATAAACGAATTTGTAGCTGGCACAAGAGTCACAGTTCTGATACTTCCTAGAGATGCCTTTGGGAATAATATCTCTTCTTCAAGTGATGATCCAAATTCTTCTAATTTTATAGTTTCTGCATCTAATGCAACTGGTTCAGTGGCAAACCTTCTCAATATCACCAACCTGGGATGGAATAAATTTGGCTACATCAGCATTGAGTTGAATGTGGCCACAGCTGGAAGCCTGTTGTTACATGTAGAAGGGGAAAATCAGGCTTTGAATGGTTCTCCACTACCATTTAAGGTGAACCCAGGACCACTGGATGTCGCCAACTGTGTGGCAACATGGAATTTTGGGACAAATGTACTACAAATATTTTCTAAAGTGGAAATCTTTATACATCAGCAAGACCAATATGGGAACCTTGTTTCAGGATTGTATGCATTTGATGCTCAAGTTGTCGAAAAGGAGACAAATTTGTCTATACCTGTAGCAGATTTACACTTTGAAGAAGTGTTGCCTGGAATTCAGTTATTTTCATTCAGTGTATTGGAACCAGGGAACTTCATTCTGACAATATTTGACACAAAGCAGAATAAGAGCATCTCCAATATGCCCTATGACTATACTGTCTTTGTAGTAGGTTATTGCGATGGGTTAAAGAGTGTCATCAATGGATCTGGTTTAGATAATTCTGTTGCTGGAGAAATGTCACGTTTTACTATTTATTTGAATGATATTTATCAGTATCCCTCCCCAGTTGAATTAGAATGGCTTCAAGTGCAAATTGTGCGGGTAATCGATTCCTATCATCTACTTCCAAGCATATACCCAATGCAGATTGTCAATGAACCACATGCATGCGTTTCCTTCAAACATATATACTCAATTACTGATAATATTTTCTTCTATATTCAGTCTGTTGGGAACTCGATAGTTCAGGCAAGTGCTTTAAATGTCATTTATACACCTGAGAAGAGTGGGATTTATGAAATTCGTTTATTTTGTGGAAATATTGAGTTGAATAATGGTCGCACATTCACAAAGGAAGTAAGAGCAGGTGAGGTTAATATGACGCTTTCAGGAGTTGTCAAGTATGCACCCAAAGTACCAAAGTTGATTAAAAATGAAATAGTTGTGAAGCTATTGGATTCATTTTCTAATCCCATAACGTTGCAACAATCAAGACTCAAACTAGAGATTGGTTCAATTAATAGTTCTGGTTTGAGTTGGATGTTTGTGGATAACAATGATGGGTCATATGTTGCTCACTATCTGGCTAAGGATGTTGGCACTTATGAATTATGTGCTTCTTTTGATGGCAACCATTTCTTACCGTGTCCCTTTGGGGTCAATGTATACAGTAGTGAATATTTTCCTAAAGCCTATGATGATGTGGTATCTGTCTGGGAAGATCAGTCAATCGCTTTTGATGCTTTAGAAAATGATTACTTTGCTGGTGACAGTGCAAATATTACTGACTCTTCAGAACCAGATCATGGATCACTTCTACAGTATGGAGGACTCTTTAGATATACTCCCTATAAGGGTTTCTTCGGAAATGATTCTTTCAATTACACAATATCTGATGTAAATGGAAATCTTGCTACTGGTGCAGTACATATATCTGTTCTTAGTATCCCACCTCAGTTTGTTTCCTTTCCAAGTCAGTTGCAAGCAATTGAAGATATGATAAGTCCCAGATTTGGTGGTTTCCCTGGTTTTGAGATAACATATTCAGATATGATGGAGAACATATCTGTTAATTTAAGTGCAGAATATGGGACGATTTTTCTCTCTCCTATGCTGATGCAATTTTGGCAGCCATTGTCGAGTGGACTTTCTGTCAACAGAGGGGATGGAGAAGCTGAGGATTTGATTTTGGAGGGTCGTGCTGAAGTAATTAATATTGCCCTTCAGTCAATCAAATATCTTGGAAATGAGAACTTTTGTGGTGATGATGCCATCCAAGTATCTACCATGAATAGAAATGGAATAAATTATTTGAATGTTCCAGTCTTCGTGGAACCTATCAATGATCCTCCATTTATTCACGTTCCTGAATTTATTATCTTGAAGAATAGTAAAGAAGATGGTTCACTAATCTTTGATAGAGAACAAGACAAGTTTGAGTTTTTCATTGGGGATCCAGATCTTCTTTACGTCCCTGGTGGTGAATCTCTTTTTGTGGTAATGTTTTCTGTGGAGGTCAATTCTGGAAGTCTGGTTGTCAATCTACCGGCTGAGCTCATTAATACAACTGAACTGAAGCTAAAGAATAGTTATCAATGGCAAACTCTTCAGACTTTTGTTACCATCTCAAAACATTTTATGGTCAAAGCAAAGGGAATTAGATTTCGGGGAACAGTTAATGACTGCAACTATGTCATGCAACAACTAATATATCAAGGTGGAGAGCATGGTGCTGTTTTAACAGTGACATTGAATGACATGGGAAATTATGGGGGTTGTCCAGACTCCGCTGAAAAGATATCAATGCCCCTGTTTACTGAAGCTAGCGTAAATCTAATAAGACGAAGCCCAATGAGTTCATTGGTAGCTCACACCCTAGGATCAGCAATTGTCGTTGAATTCGTCGTGGTGTTTTTTCTTGGTGTGCTACTTTTATTTTTCACATGCAGATGTGCAATTGTTCTCATAAATGAAAGACGAAGCTGTGATGTCAAGAATATTAGGCTATCTAAAGTATCAAGTTTGCATAAACCAACTCCCAACACAGATTTATCTACGGATGTGACTTACTTCACTGGTTGTTGTCCAAGCCGCTTGTTACTTACTGGCCGGCCTTCCGATTTCCACCAGAGGTCACACCACCATTCAAGAAATGGAGACTCCGGAGACTCTGCCCAAGACACTTTCGGGGCCTCTCAATCTTATAGTGATCGCTATCAACGGACTCCTCTTCCTAGTTCCATGCCGCTAGCTATTGAAAAGGGGAAGAGTGTGACGGTTTGA 3486 39.1 MAIQMHLCVAVALLASSSFFTASTSGLAQSGTLSWFLFQGTSVFVSCFADEVPKPSFAFSWLDDLNTFEAGGIATIKIKVLGDFDSRGNGSLDERAFNPTLTINGKMGNSSYISGVSSNLEGDSSNWRISFTPIMAGVFNVIISDKHFGILDSSLHFEVLEGHLYPSVCVASWMSPINEFVAGTRVTVLILPRDAFGNNISSSSDDPNSSNFIVSASNATGSVANLLNITNLGWNKFGYISIELNVATAGSLLLHVEGENQALNGSPLPFKVNPGPLDVANCVATWNFGTNVLQIFSKVEIFIHQQDQYGNLVSGLYAFDAQVVEKETNLSIPVADLHFEEVLPGIQLFSFSVLEPGNFILTIFDTKQNKSISNMPYDYTVFVVGYCDGLKSVINGSGLDNSVAGEMSRFTIYLNDIYQYPSPVELEWLQVQIVRVIDSYHLLPSIYPMQIVNEPHACVSFKHIYSITDNIFFYIQSVGNSIVQASALNVIYTPEKSGIYEIRLFCGNIELNNGRTFTKEVRAGEVNMTLSGVVKYAPKVPKLIKNEIVVKLLDSFSNPITLQQSRLKLEIGSINSSGLSWMFVDNNDGSYVAHYLAKDVGTYELCASFDGNHFLPCPFGVNVYSSEYFPKAYDDVVSVWEDQSIAFDALENDYFAGDSANITDSSEPDHGSLLQYGGLFRYTPYKGFFGNDSFNYTISDVNGNLATGAVHISVLSIPPQFVSFPSQLQAIEDMISPRFGGFPGFEITYSDMMENISVNLSAEYGTIFLSPMLMQFWQPLSSGLSVNRGDGEAEDLILEGRAEVINIALQSIKYLGNENFCGDDAIQVSTMNRNGINYLNVPVFVEPINDPPFIHVPEFIILKNSKEDGSLIFDREQDKFEFFIGDPDLLYVPGGESLFVVMFSVEVNSGSLVVNLPAELINTTELKLKNSYQWQTLQTFVTISKHFMVKAKGIRFRGTVNDCNYVMQQLIYQGGEHGAVLTVTLNDMGNYGGCPDSAEKISMPLFTEASVNLIRRSPMSSLVAHTLGSAIVVEFVVVFFLGVLLLFFTCRCAIVLINERRSCDVKNIRLSKVSSLHKPTPNTDLSTDVTYFTGCCPSRLLLTGRPSDFHQRSHHHSRNGDSGDSAQDTFGASQSYSDRYQRTPLPSSMPLAIEKGKSVTV* 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1581334 1592577 - Vvi5g162 Vvi5g162 786304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g162 1161 Gene3D Immunoglobulins 523 627 IPR013783 -
Vvi5g162 1161 ProSiteProfiles Filamin/ABP280 repeat profile. 565 623 IPR017868 -
Vvi5g162 1161 Gene3D - 631 718 - -
Vvi5g162 1161 MobiDBLite consensus disorder prediction 1109 1128 - -
Vvi5g162 1161 Pfam Filamin/ABP280 repeat 544 619 IPR017868 -
Vvi5g162 1161 Pfam Filamin/ABP280 repeat 386 510 IPR017868 -
Vvi5g162 1161 SUPERFAMILY E set domains 546 626 IPR014756 -
Vvi5g162 1161 MobiDBLite consensus disorder prediction 1138 1161 - -
Vvi5g162 1161 Gene3D Immunoglobulins 164 273 IPR013783 -
Vvi5g162 1161 PANTHER JITTERBUG, ISOFORM N 196 1102 - -
Vvi5g162 1161 PANTHER JITTERBUG, ISOFORM N 51 165 - -
Vvi5g162 1161 Pfam Bacterial Ig domain 621 703 - -
Vvi5g162 1161 PANTHER JITTERBUG, ISOFORM N 51 165 IPR044801 GO:0030036|GO:0051015
Vvi5g162 1161 PANTHER JITTERBUG, ISOFORM N 196 1102 IPR044801 GO:0030036|GO:0051015
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g162 - - - vvi:100256778 2162.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g162 . . . . . Bpe14g01122 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0134 Cone4ag0139 . . . . Blo02g00498 . . Bda13g00194 . . Bma02g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016220 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8