Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g168 ATGATGACATGGCTAAATGTAAGTGGATGCATGACAATTCCAGTTACCCAAAATACCCGTAAAATCTCCCGCGCAAAAATAATCAAAAACGAAAATTCCCTCAACACAGGCCCAGAAGCTGTGTCTTCCTCCCAAAATCGCCGCCGCCACGCCCATGGTGATACCAACCGAAGAAGAGGCTCCGTCAACGAGGGGGCCGTCACCTCCGCAGCTCACCGACGACGATATTACGCTATCGTCTTCGATTTGCTCCAAATTGTCAATCAAGATGATGCTCAACTCCTCGATCTCCTTCCTCGGTGTCTCGACCTGATTCGGAATTCGGAAGAGATCGAACGAGGTGGCGATTTTGTGAATTCCGTGGTTGATCATGTTCTTACGAGTGATTGGTCCAAGGCTTTGCTTGTGAAGGTGGTTTCACTTCTTCGGGAATTTTCGTATCTGGATAAGGGTAGGTGTAGGGAGTTTTTGGAGAAGGTATTTGTTGGAATGAAGGGAGTGGATTTGCAGGACTTGCCGTCGCTGGTTTATCAGTTACTCGTTTTGGCATCTAAGGGGTTTAGTAAGAGGGAAGTGATTGAAGGGATTGTAATGTTTTTCGGGTCAAAAATGGGGTCAAAGGCAACTTCTATTGTTCGGCAGGTTGAAGGGACTGTGTTGCTTCATGTGAATTTTGCTGTCAAGCAGGATCCTTCGTTGGGGCAAGAGGTTCTGGGCCTAGTCAGGTCAGATCTTAGGGTTTTTAATAATTTTACTGTTGCCATTTTGTTTTCCCTGGCAAGGGTTCGGAGGTTTAGTGAGAGTTCCATGGGGATTTTGAAGGCTGCCCTGATCATGGCATATCGGGACTTCAAGTCTGCAGAGGACTGTAAATGGCTATCAAATGATTTGAAGGAAGGATATCTGCAGACTGTCAAAATAGTAGAGAAGGCTGTTCTGCGAGCTGTTAATGATAGCAACTATGGAAGGGAGCATATTGTGCCCAGTATTGTACAGTTAGGTTTCATATTGCTGGAGTCAGCAGAAGATAGAAACCAAAAAGCATTCTACAATTCCAATGGTCTGATGGGTACAGAAGAACTTGGTATTCAGATGCTGAAAAGTTTGTTTGATGTCCATGATATGGCAAGAAATGAGATTATTGAACAATGCAAATTTCGTATCCTCTCTTTGAAGCCTGAACAGAGCATGCCAATCATAAGACTGCTTGGTTATCTGATTCAGAGTTTACCCTACCCAATGCTGGAACATGTTTCACGTCTAAAGGAATTTTTGGATTATTTCACATTTATGCATGGCAAGATAGCCATCTGTTTTGTTACTGCTCTGTTGCCTCTCATCAAATTTAGTCGAGATCTTCAGGATTACACCATATTGGTTGTGCGCAAGGCTATGTTTAGACGAGAAGATACAGTTCGTATTGCAGCAATAAATGCCATTATTGATCTGGTTTTGGCGGAAAAACAATCCAAAAGAGGTGGGCCATATTCTTTCCAGGACTCTTCAAGCCAAGCCAGTAGCAGCCAGCAAGCAGAGATACCCTGCAGCTTGGGGGCTGGTCTATTTCAAGAGTTGAGTGGTTTGCTGCAGAGATGTCTTTGTCAGCAGGCAAAAGTCAAAGAGATCATGTACCATGGGCTTGTAAAGCTTGTCTTGGTGGATCCACTAACTGCTGGGCCTGTCTTGGATTTTCTCTTGCCTCACTTTCTTCATTTTTACAGGGAGCAGGATGCAGATGCTCAACTTGGCATTAGCTGTTGTGTTAAATCAGAAAGTGGGAAAGTTTGTATTGAAGAACCTTTAGATTGTCTCCTATCCTCTATCTCTTGGATTCTCCTCCTTCAGCCACCTGGTAAAACTGATCGCCCCTCAGATTCATCATGGGCATGTTTTGGTTTCTCTCTTTCACAGGAGAATGAGGCTGGAAAAATTCTGTCCAGTGAGTCATTCACTAGTGCTTTATTAAAGATCCGCCAGTGTTTGAGAAGAGGAAATATGGAAGACATTTTTGGTCAGACCCAGGATACAGTCTCTAGAACATCTGAAGACGAGAAGAGTAGATGCTGTGCTTTGATTTTGTCAGGAATTGTTGAGGTTTTGTTGAATACTATTGCTACTGAGATGGAGAAAGCGACTGACATAGAAAAGGTAGATCTACTAAAGGAGCTTATTGATTTTGTTAATCATTATGATTTTTTGAAAAAAAGTAGGTCTACGTCAAGGCAGCGGAATGGTATCAAAAGAGGGAATCTAAGAACTGCGGTTCATGATATACCAGATAGCACTGATTTGGGCCACATGACATTGTCCCAAGCACGAATACCTTTCCTGGCAACTTCAAGTATCTACCAGCTACTGCAAACATTTCTGGACCTTTATAATATTGATTTCTCAAATGGTATTACAACTTCTCAGAACTGTAGCCAATCATCCTCAGGCAAAACTTTAGTTTGCACTTCAAAAATGATTTCCTTTGTCTTAAACGTTTCCCTCCATCAAATCAAATCTTTCACCGTTTTGGGAAAAGATGATCCATTAAAGACTTTGATCTATGGAGAAATCGAGATGCTGGGTCCTCCTTTGCTGAAATTGATTTGGTTACTCAAATCAGAGCCTAAGTTGGAGGCAGATCAAAAGAAGAAAGAAGGTAAGGGGAGGAAAGATGTTGAGGACAGAAAGGAACACTTGCATCTGGCCTTAGTTTGCTTGAAGGAATTGATAAAAATTTGCTTGCAGAACCCACACCAGACCAGCTTGCTTGAAGATTTAGTGTCTTTGTCTACAGTTGAGTATCCACTGAGAAATGTGGCTGATGTTGGGTCCGATGATGAATGTGAAATAGCCTCTGGGACTGATGATCAAAACATAAAAAGCAAAGTATTGCTTATAAAAAGATGCGTAAGGCCATTGTTCTCTGAGCTTCTTGGGCTTTCATTTGTTCGTGAGGTTGAGATTCTATGTGATATAGTAATGATGATTGGTAACAAGCTGCCCTGCAAATGGAGGAACTTTCATGGAGCCTGGGCTGTTCGTATTTGCAACACCAGTGGTATTACAAATTCCAAGGTTGCAAAAAATTTGGTTGACCTTGCTATATGTTTAAGCTCACCTCCAGATGATCTAATTGTGGCTCAAGAAATGGCGAAGGAGCTGTTAAAAGTTATGGGATCAGAGAGTAGCAATCCACTGGAGACATCTGAAACATATGCTATCATAAATCATTCAACAACCAGTGCAGTAGCTTCTTCTATACTGGAGTTTATTGAATCAGTAATAGTTGATATGGATTGGGCTACAGCAAAGCTGAAGACATTCTCTCCAGTTACTCTAGAAACTGCTTCCCTTGATTTGAATGGAGGACATGCTCCGGCATTGTCTTTGGAAGAAACTCTCTACTCAAGAGCTGAAGCGCTGGTTAGAGTCTTATCTTCTTTTGTTTTAATGAACATGAAGGACCCTCAAGCAGAGCATTTGCTTAGATTGATTACAAGGTTTTACAAGCATTTAGCTCGAATGTCGAAGCTTCGGATTGCTCCTAAAGGCTGCAGGCAACTCTTACCTGGCCTTAAGTTCCAGAAGCTTGTGGAACTAACATGCAGGCAGCTGACTGTTCCTCTATATAGCTTTGTGGCACTGATGCAAAGGGATCAACAAGAGAATGCAAAGAGCAGAGGACTACTCAGCAAGATTAAGAGGGAGAACAGATGCATCCCAGACCTGATCTTCCAGATAGAAGATTATGAAAAGTATCTCATCCAGCTCAGCAAGGCTACCAAAGTCAATCTATTGAGGCACGCTAAGCGTAGCACTTCCAGAGATTTCAAAATATTAGACCACCCCAGAACCAACACCGGGGAAGAAGAGCCTCCAAACCACAATCATTCAACTGCAGTTCAGAATGAAACAGGCCAGGAATGTGAAGATAATGAAGGAAATGGATCAGAGAGGGCTCCATCACCTGAACCCCACAGTCCCTTGGCTGCTGAGGATTCTGAATCTGATGGTGAAGATAGAGATGCTCTTCCCAACCCCAAGAGATCGAAGATGAGTAAGGTTACAATCAATCAAAGATGGAAGATGGGTTAG 4086 42.61 MMTWLNVSGCMTIPVTQNTRKISRAKIIKNENSLNTGPEAVSSSQNRRRHAHGDTNRRRGSVNEGAVTSAAHRRRYYAIVFDLLQIVNQDDAQLLDLLPRCLDLIRNSEEIERGGDFVNSVVDHVLTSDWSKALLVKVVSLLREFSYLDKGRCREFLEKVFVGMKGVDLQDLPSLVYQLLVLASKGFSKREVIEGIVMFFGSKMGSKATSIVRQVEGTVLLHVNFAVKQDPSLGQEVLGLVRSDLRVFNNFTVAILFSLARVRRFSESSMGILKAALIMAYRDFKSAEDCKWLSNDLKEGYLQTVKIVEKAVLRAVNDSNYGREHIVPSIVQLGFILLESAEDRNQKAFYNSNGLMGTEELGIQMLKSLFDVHDMARNEIIEQCKFRILSLKPEQSMPIIRLLGYLIQSLPYPMLEHVSRLKEFLDYFTFMHGKIAICFVTALLPLIKFSRDLQDYTILVVRKAMFRREDTVRIAAINAIIDLVLAEKQSKRGGPYSFQDSSSQASSSQQAEIPCSLGAGLFQELSGLLQRCLCQQAKVKEIMYHGLVKLVLVDPLTAGPVLDFLLPHFLHFYREQDADAQLGISCCVKSESGKVCIEEPLDCLLSSISWILLLQPPGKTDRPSDSSWACFGFSLSQENEAGKILSSESFTSALLKIRQCLRRGNMEDIFGQTQDTVSRTSEDEKSRCCALILSGIVEVLLNTIATEMEKATDIEKVDLLKELIDFVNHYDFLKKSRSTSRQRNGIKRGNLRTAVHDIPDSTDLGHMTLSQARIPFLATSSIYQLLQTFLDLYNIDFSNGITTSQNCSQSSSGKTLVCTSKMISFVLNVSLHQIKSFTVLGKDDPLKTLIYGEIEMLGPPLLKLIWLLKSEPKLEADQKKKEGKGRKDVEDRKEHLHLALVCLKELIKICLQNPHQTSLLEDLVSLSTVEYPLRNVADVGSDDECEIASGTDDQNIKSKVLLIKRCVRPLFSELLGLSFVREVEILCDIVMMIGNKLPCKWRNFHGAWAVRICNTSGITNSKVAKNLVDLAICLSSPPDDLIVAQEMAKELLKVMGSESSNPLETSETYAIINHSTTSAVASSILEFIESVIVDMDWATAKLKTFSPVTLETASLDLNGGHAPALSLEETLYSRAEALVRVLSSFVLMNMKDPQAEHLLRLITRFYKHLARMSKLRIAPKGCRQLLPGLKFQKLVELTCRQLTVPLYSFVALMQRDQQENAKSRGLLSKIKRENRCIPDLIFQIEDYEKYLIQLSKATKVNLLRHAKRSTSRDFKILDHPRTNTGEEEPPNHNHSTAVQNETGQECEDNEGNGSERAPSPEPHSPLAAEDSESDGEDRDALPNPKRSKMSKVTINQRWKMG* 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1655451 1664828 - Vvi5g168 Vvi5g168 786310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g168 1361 Pfam FANCI solenoid 2 326 481 IPR029315 -
Vvi5g168 1361 MobiDBLite consensus disorder prediction 1273 1361 - -
Vvi5g168 1361 PANTHER BC025462 PROTEIN 80 1352 IPR026171 GO:0006281
Vvi5g168 1361 MobiDBLite consensus disorder prediction 1327 1345 - -
Vvi5g168 1361 MobiDBLite consensus disorder prediction 1289 1307 - -
Vvi5g168 1361 Pfam FANCI solenoid 4 1043 1278 IPR029314 -
Vvi5g168 1361 Pfam FANCI solenoid 1 88 228 IPR029308 -
Vvi5g168 1361 MobiDBLite consensus disorder prediction 1273 1288 - -
Vvi5g168 1361 MobiDBLite consensus disorder prediction 33 66 - -
Vvi5g168 1361 Pfam FANCI helical domain 2 499 735 IPR029312 -
Vvi5g168 1361 Pfam FANCI helical domain 1 232 313 IPR029310 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g168 K10895 FANCI; fanconi anemia group I protein - vvi:100260122 2446.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0761 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .