Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g170 ATGGATAATATAAGAAATCGTAAAACCAAACCATTTATTTCGGACAACCACCCTGACCTCGTTCTTCCAGCCATCAACAAAACACTCCAGAAGCTGGGAATGGAGTATGTGGAATTTTATCTGGTGCATTGGCCGGTGAGGTTGAAGAAGGAAGCTCCAGACAAGGATTTCAGGGGGGAGGAAGTTCTTCCATGGGACATGAAAGGGACATGGGAGGCCATGGAAGAGTGCTGCAGATTGGGCTTAGCCAAATCTATTGGAGTCAGCAACTTCAGTTGCAAGAAGCTCTCCCAGCTTCTCCAGTATGCTGCCATCCCTCCTGCCGTTAATCAGGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAGCTTTCTGGGGCTCCCTTGCAGTGGTGGAGAGTCCAATCTTGAAAGAAATCTCTGCTGCAAAAGGGAGAAGCTTGGCGCAGGTTGCTTTGAGATGGTTGCACCAGCAAAGGGTTAGCATTCTAGTTAAAAGCTTCAGCAAGGAGAGGATGAAAGAAAATCTTCAAATCTTCGATTGGGAACTCAATGATGATGAGCTGACCAAGATTGAGAATATTCCGCAGCGCAGGGGTTTTTCAGGACATTGGTTTGTCCATCCTAATGGGCCTTACAAGTCCGTGGAGGAGCTTTGGGACGATGATGCATGA 738 48.24 MDNIRNRKTKPFISDNHPDLVLPAINKTLQKLGMEYVEFYLVHWPVRLKKEAPDKDFRGEEVLPWDMKGTWEAMEECCRLGLAKSIGVSNFSCKKLSQLLQYAAIPPAVNQVEMNAAWQQAKLREFCREKGIHVSAWSPLGANGAFWGSLAVVESPILKEISAAKGRSLAQVALRWLHQQRVSILVKSFSKERMKENLQIFDWELNDDELTKIENIPQRRGFSGHWFVHPNGPYKSVEELWDDDA* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1690233 1699142 - Vvi5g170 Vvi5g170 786312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g170 245 PRINTS Aldo-keto reductase signature 27 45 IPR020471 GO:0016491
Vvi5g170 245 PRINTS Aldo-keto reductase signature 74 91 IPR020471 GO:0016491
Vvi5g170 245 PRINTS Aldo-keto reductase signature 108 137 IPR020471 GO:0016491
Vvi5g170 245 PRINTS Aldo-keto reductase signature 152 176 IPR020471 GO:0016491
Vvi5g170 245 ProSitePatterns Aldo/keto reductase family signature 2. 74 91 IPR018170 GO:0016491
Vvi5g170 245 PANTHER METHYLECGONONE REDUCTASE-LIKE 9 243 - -
Vvi5g170 245 PIRSF AKR 8 239 IPR020471 GO:0016491
Vvi5g170 245 Gene3D - 7 245 IPR036812 -
Vvi5g170 245 ProSitePatterns Aldo/keto reductase family putative active site signature. 185 200 IPR018170 GO:0016491
Vvi5g170 245 SUPERFAMILY NAD(P)-linked oxidoreductase 9 234 IPR036812 -
Vvi5g170 245 PANTHER ALDO/KETO REDUCTASE 9 243 - -
Vvi5g170 245 Pfam Aldo/keto reductase family 15 216 IPR023210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g170 K22374 DMAS1; 3''-deamino-3''-oxonicotianamine reductase [EC:1.1.1.285] - vvi:100245420 399.438
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g170 . . . . . . . . . . Cma06g01578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003177 1 1 1 1 1 2 1 1 2 1 2 2 1 2 2 1 2 1 1 2 2 2 1 1 1 3 1 3 2 6 50