Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g172 ATGGAAATCCCAGAAGTATTACTGAGCTCTGGCCAAAAAATGCCACTGCTAGGCATGGGAACAGCAACCTTTCCCCTCCCACCGCCTCACCAAGTCACCTCCATCCTTGTGGATGCCATCGAGGTGGGTTACCGCCACTTTGACAGTGCTGCTGTCTATGCTTCTGAAGAGCCTCTTGGCCGAGCAGTGACTGAAGCTATAGAGCGAGGTCTCATCAAGAGCCGAAGTGAATTGTTCATCACTTCAAAGCTATGGTGCACTGACAACCACCCTGACCTCGTTCTTCCAGCCCTCAAGAACACACTCCAGAAGCTGGGAATGGAATATGTAGATCTTTATCTGGTGCATTGGCCTGTGAGGTTGAGGAAAGAAGCTCCAATCTTTGAGTTTTCAGGGGAGGATGTTATTCCCTGGGACATGAAAGGAACATGGGCAGCCATGGAAGAGTGCTGCAGATTGGGCCTAGCCAGATCTATTGGTGTAAGCAACTTCAGTTCCAAAAAGCTCTCCCAGCTTCTCCAACATGCTACCATTCCTCCTGCTGTTAATCAGGTGGAGATGAACCCAGCATGGCATCATGTGAAATTGAGGGGGTTCTGCAAGGAGAAGGGGATTCATGTGACTGCATGGTCTCCACTGGGAGCAAATGGAGCCTTTTGGGGTTCCCTTGCTGTGGTGGATAATCCAATTTTGAAAGAAATCTCTACTGCAAAAGGGAAGAGCTTGGCACAGGTTGCGTTGAGATGGTTGCACCAGCAAGGAGTTAGCATTGTAGTTAAGAGCTTCAATAAGGAGAGGATGAAGGAAAATCTTAAAATCTTTGATTGGGAACTCACGGACAATGAACTAGCCAAGATCAAGCAGATCCTGCAACACAGGGGTTGCCCAGGACAGAGTTTCGTTCATCATGATGGACCTTATAAGTCATTGGAGGAGCTTTGGGACGATGATGCCTGA 957 48.48 MEIPEVLLSSGQKMPLLGMGTATFPLPPPHQVTSILVDAIEVGYRHFDSAAVYASEEPLGRAVTEAIERGLIKSRSELFITSKLWCTDNHPDLVLPALKNTLQKLGMEYVDLYLVHWPVRLRKEAPIFEFSGEDVIPWDMKGTWAAMEECCRLGLARSIGVSNFSSKKLSQLLQHATIPPAVNQVEMNPAWHHVKLRGFCKEKGIHVTAWSPLGANGAFWGSLAVVDNPILKEISTAKGKSLAQVALRWLHQQGVSIVVKSFNKERMKENLKIFDWELTDNELAKIKQILQHRGCPGQSFVHHDGPYKSLEELWDDDA* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1707275 1708873 - Vvi5g172 Vvi5g172 786314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g172 318 ProSitePatterns Aldo/keto reductase family signature 1. 43 60 IPR018170 GO:0016491
Vvi5g172 318 ProSitePatterns Aldo/keto reductase family putative active site signature. 258 273 IPR018170 GO:0016491
Vvi5g172 318 PANTHER ALDO/KETO REDUCTASE 5 316 - -
Vvi5g172 318 Gene3D - 4 318 IPR036812 -
Vvi5g172 318 ProSitePatterns Aldo/keto reductase family signature 2. 147 164 IPR018170 GO:0016491
Vvi5g172 318 SUPERFAMILY NAD(P)-linked oxidoreductase 6 305 IPR036812 -
Vvi5g172 318 CDD AKR_AKR4A_4B 10 291 IPR044497 GO:0016616
Vvi5g172 318 Pfam Aldo/keto reductase family 17 289 IPR023210 -
Vvi5g172 318 PANTHER ALDO/KETO REDUCTASE FAMILY OXIDOREDUCTASE 5 316 - -
Vvi5g172 318 PRINTS Aldo-keto reductase signature 39 63 IPR020471 GO:0016491
Vvi5g172 318 PRINTS Aldo-keto reductase signature 100 118 IPR020471 GO:0016491
Vvi5g172 318 PRINTS Aldo-keto reductase signature 147 164 IPR020471 GO:0016491
Vvi5g172 318 PRINTS Aldo-keto reductase signature 181 210 IPR020471 GO:0016491
Vvi5g172 318 PRINTS Aldo-keto reductase signature 225 249 IPR020471 GO:0016491
Vvi5g172 318 PIRSF AKR 1 312 IPR020471 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g172 K22374 DMAS1; 3''-deamino-3''-oxonicotianamine reductase [EC:1.1.1.285] K19651 vvi:100241482 654.825
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003177 1 1 1 1 1 2 1 1 2 1 2 2 1 2 2 1 2 1 1 2 2 2 1 1 1 3 1 3 2 6 50