Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g183 ATGGGTGGTGGTGAGCTGTTTCATAGAGGCCATAGAACCCAGACTCTCCCTCTCCTCCGCTCCTCACACACTCGGTATCTTTCTCTCTATCTGACCAAGCTAACAAACCCCATTCGCTACGTTCTTCGCGAACAGCGAATCCTCTTCTTCTTCATCGGAATCTCCATCTCTACCCTCATCTTGAACTCCTTTCCACCCTCCCATCACCAGATCCCTCCCCTACTTCTCCGGTCCGATTCCACTCATTCCACTCATCCCGTCGATCAGATCTACCACCTCGCTTGCCCCGCATCTCCTATCAATGCGCTTTACCATTTCGTTTCTACTTTTTCTACCAATGTGGTAGGGACACTCAACATGCTTGGGCTGGCAAAGAGGGTGGGTGCGCGGTTCTTGCTAACGAGCACCAGCGAGGTGTACGGTGATCCTCTGCAACACCCCCAGGTGGAGACATACTGGGGCAACGTCAACCCAATTGGTGTTCGGAGCTGCTACGATGAGGGGAAGCGCACAGCGGAGACATTGACCATGGCTTATCACAGAGGAGCTGGGATCGAGGTGAGAATTGCTCGAATTTTCAACACTTATGGGCCGCGCATGTGTATCGATGATGGTCGTGTTGTCAGCAATTTTGTTGCTCAGGCACTGAGAAAGGAGCCATTGACTGTTTACGGCGATGGGAAGCAAACCAGGAGTTTCCAATACGTTTCTGACCTGGTGGAGGGTCTTATTCGGTTGATGGAAGGGGAACATGTTGGTCCTTTCAACCTTGGCAACCCTGGGGAATTCACCATGCTTGAACTCGCCCAGGTGGTCCAAGAGACAATCGATCCAAATGCGAAGATTGAATTCAGACCCAACACAGAAGATGACCCACACAAGAGGAAACCGGACATCTCAAAGGCTAAACAGCTTCTGGGCTGGGAGCCATCTGTGTCCCTTCGCAATGGACTTCCTCTCATGGTTTCTGATTTCAGGCAGCGCCTTTTTGGGGATCGAAAGGAAGTTGGTGCAATCGCTTCTGTGGTGTCCAACTGA 1038 51.54 MGGGELFHRGHRTQTLPLLRSSHTRYLSLYLTKLTNPIRYVLREQRILFFFIGISISTLILNSFPPSHHQIPPLLLRSDSTHSTHPVDQIYHLACPASPINALYHFVSTFSTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMAYHRGAGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISKAKQLLGWEPSVSLRNGLPLMVSDFRQRLFGDRKEVGAIASVVSN* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1806219 1809826 - Vvi5g183 Vvi5g183 786325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g183 345 Pfam GDP-mannose 4,6 dehydratase 85 319 IPR016040 -
Vvi5g183 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 5 80 - -
Vvi5g183 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 86 337 - -
Vvi5g183 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 5 80 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vvi5g183 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 86 337 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vvi5g183 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 331 IPR036291 -
Vvi5g183 345 Gene3D - 69 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g183 K08678 UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35] - vvi:100260209 506.138
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g183 Vvi7g304 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120