Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g184 ATGCCAGGTCCGACGGTAGAGATGGAGCCAGTGGAGCCACAGTCTCTGAAGAAGCTCAGTTTCAAATCCCTAAAGCGAGCTCTCGATCTCTTCTCTCCAATCCATGGTCACTTTGCTCCTCCCGATCCCGAAAGTAAGAAGATACGGCTGAGCCATAAGATTCAGCTAGAATATGGAGGCATCAAAAGTGCTACGAACCCTAATCAAGCCAATTCTACCCAACCAGATGGCAATAGTCAAGCCTCAGCTCCTTCTAATGCCCTTGCTCTTCCCGGTACTGAAAATTCTAAGGATCCACAGACAGGGGGAACTCAAAATGCTTTAGTTGTCGGTCCATCAGTGCAACAAAAGGGATTAAATGATGTCGGTCATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGTCCTGTATGGCGTCCTCCATGGAGAAATTACAGGGTCATTAGTGGCCATTTAGGATGGGTGAGATCTATTGCATTCGATCCAAGTAATTCATGGTTTTGTACTGGCTCTGCAGATCGCACAATTAAGATATGGGATGTAGGAAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAGGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGATAATACAGTTTGCTCAGTTTTTACCCGACCTACGGATCCACAAGTTGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTGATGGCTACAGCAGGCGACAATGGGAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTTCAGCAAGCCCAAACAATTGTACAGCCTGGCTCACTGGATAGTGAAGCTGGCATCTATGCTCTATCCTATGACTTAACTGGTTCGAGGTTGGTCACTTGTGAAGCAGACAAGACTATTAAAATGTGGAAAGAAGATGAAAATGCCACCCCAGAAACTCATCCTCTAAATTTCAAGCCACCTAAAGATATTAGGCGGTTCTAG 1455 44.95 MPGPTVEMEPVEPQSLKKLSFKSLKRALDLFSPIHGHFAPPDPESKKIRLSHKIQLEYGGIKSATNPNQANSTQPDGNSQASAPSNALALPGTENSKDPQTGGTQNALVVGPSVQQKGLNDVGHLGKSTAVVSSSGPSERNLSTSAIMERIPSKWPRPVWRPPWRNYRVISGHLGWVRSIAFDPSNSWFCTGSADRTIKIWDVGSGRLKLTLTGHIEQIRGLAVSNKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMATLTHHKKSVRAMALHPKEHTFASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMATAGDNGSMWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDLTGSRLVTCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1814419 1837357 - Vvi5g184 Vvi5g184 786326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 253 IPR001680 GO:0005515
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 330 - -
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 337 IPR001680 GO:0005515
Vvi5g184 484 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Vvi5g184 484 MobiDBLite consensus disorder prediction 61 107 - -
Vvi5g184 484 Gene3D - 150 484 IPR015943 GO:0005515
Vvi5g184 484 Pfam WD domain, G-beta repeat 165 202 IPR001680 GO:0005515
Vvi5g184 484 Pfam WD domain, G-beta repeat 293 328 IPR001680 GO:0005515
Vvi5g184 484 Pfam WD domain, G-beta repeat 249 286 IPR001680 GO:0005515
Vvi5g184 484 Pfam WD domain, G-beta repeat 208 244 IPR001680 GO:0005515
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 289 - -
Vvi5g184 484 SUPERFAMILY WD40 repeat-like 159 461 IPR036322 GO:0005515
Vvi5g184 484 MobiDBLite consensus disorder prediction 60 107 - -
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 207 - -
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 295 IPR001680 GO:0005515
Vvi5g184 484 SMART WD40_4 247 286 IPR001680 GO:0005515
Vvi5g184 484 SMART WD40_4 331 369 IPR001680 GO:0005515
Vvi5g184 484 SMART WD40_4 423 461 IPR001680 GO:0005515
Vvi5g184 484 SMART WD40_4 205 244 IPR001680 GO:0005515
Vvi5g184 484 SMART WD40_4 289 328 IPR001680 GO:0005515
Vvi5g184 484 SMART WD40_4 163 202 IPR001680 GO:0005515
Vvi5g184 484 SMART WD40_4 372 411 IPR001680 GO:0005515
Vvi5g184 484 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 10 484 IPR045241 GO:0000398
Vvi5g184 484 PRINTS G protein beta WD-40 repeat signature 189 203 IPR020472 -
Vvi5g184 484 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Vvi5g184 484 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Vvi5g184 484 PANTHER BNAA01G27690D PROTEIN 10 484 - -
Vvi5g184 484 CDD WD40 166 461 - -
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 249 - -
Vvi5g184 484 MobiDBLite consensus disorder prediction 463 484 - -
Vvi5g184 484 ProSitePatterns Trp-Asp (WD) repeats signature. 315 329 IPR019775 -
Vvi5g184 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 211 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g184 K12862 PLRG1, PRL1, PRP46; pleiotropic regulator 1 - vvi:100248018 970.689
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008619 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 35