Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g186 ATGGCTTCCATCTCTTCTTCTTTCTCTTCCTTGGCTTCAACTCATGATCATGAGAGGCTGGACCTTCAATCCATAAGGGCACTCGTTGTTTCAGTCAATCACCACATACATGAATTCTTGGCCAACAATGAGACCAGGAAGTCTTTAAAATTGAGATGCAGCTTAAAGCTCAGGATTCAAAAGCAGGAGTTCTTTGAGTTCTCAGAGCACTCGGTTATATCAAATCTTTACTGGGGCATTGAGAGTGTTGAAGCAGCAATTCGGGCTAAATGGCCTGAGGAGAAAACCTCCCGGCTAAAGAATTCAGAACAAATGCTTCAAGTCCCAGCATTGCTTGATGAGCAAGGAACCACAGGAGGAATCTCAAACCGATACATAGTTTGTTGCTCCTACTTTTACCTCTCTATTGTTAGAAAACTCCAAAGAGATGAGTGGCAGGTGGCACTGCATTTTCTCCAAGCTTTGATGGTTTCTCCAAGGCTAATCCAGACAGAATTTGCACCTGGACTTTGCGAGAATCTCTTTCTTACACACTCTATCTCAGAGAGGCAAAATGTGGCAATAAGAGAGACAGCAAAGAGATACAAGAGCTGGTTGATGTACTATCAGGTCATGCAATATGGCGAGACCCCTCAAAGACCTGGCGGATACAATGATATTCTTTCCCCTCTATATACCCAAATGACCAAGAAAATATCTTTATTTGCTGGGAACTACAGAATAATTCAAGATTATAGGAAAGCTCTTAACAATTCAGACCAGGTTAGCAGACAAGATATCAAAAGGAGTTCAAATATCAAATGCCTTCAGGATATCTTAATGGAATCCCAATCAGATACACCAACTTCTGATGATTCTTTCGATGACAATGATTCTGCAGATGGTGATTCAGAGGCATATGCAGATGAGACTCAAAGCTCAATGGAAGCTGCAAGAATAAAAGCAGATCAAGGACGGATGGAAATTTCTGATCAGAGGTTCCAGAACTCTTGCTGCATATCAACATCTTTCCCACCACTGCATGAAGAAATCAATGAAGCAAATATCAAGAAGTTATTTTCTGGCAGATTTTCCAGGTCCCTCAATGATTTAAATCTATCGATTTTGGAACTTGGAGTTGAGAAATCACATACCCTCTGGAGTTGCCATGCCCAAGAAGAGACAACTTGGAGGAGATTAGAGCCAGATGACTTCCAGATATTGGATTGTCTAGCAGCTACATCTCTGCAGAATTATATGTTCGCACAGATGGAGCACAACCAAGGAAATGGTGCAAGAAAAAAACATAACTCAAGCAGGCGAAAGAACTTACATGAAGTTTGTTTACATCCAGAAAAAGATTCCCATGGAGAACTATTGAGGGCACTTGACAAAGCAATTTCAAAATTATGGTTTTCAGAAGGACAAGGAAAATATGATGAAGATTCGTCTGTGGAAGTTACAACCATATATGAAATGCTGACCAATAAAACAGGGGTAAAATACACTCTTTTAAAGGATGCCATACTGGATCAACTGCTGAGTTCTATTTCAACTTCCAAAAAAGAGGGAATCGTGAGGGCATCAGTGTCTATTCTCTTGACTATCATTGCAGGGAACAAGTCAGTTATAGATGACATCAAGAAGAAGGGTTTACAGTTGGGCCATTTGGCAAATGCTCTAAAAAGAAATGTGTATGAGGCTGCTACTCTTATCTACTTAATAAATCCTTCTCCCACAGAAATTAAAACTTTAGAACTTTTACCAACACTGATGAATGTTGTGTGCACTTCAAACAATTATGCGGGTGGCCCAGCATCACTTCCGACACCTCCTGCAGCATCATTGATGATTATTGAAGCATTAATAGCTGCATTTGACTATGCTACAAATAGCATGCATTTGGCTGAAATCAGTTCACCCCAAGTTCTTTCAGGACTCCTGGATGTTGCAAGAAATAATAATCTGGAAGAGCTTATCCCGTTGGCCACTATTCTTGTAAAATGTATGCAGTTTGACGGACAATGCAGAAACTATATATCACAATTTACTCCTATGGCTCCATTTATCTATCTCCTAAGAAGTAACAAGAGGCGTGTCAAGCTCATTGCGCTTGAATTCTTTCATGAAATCCTTCGCATGCCGCGGTCATCGGCAATTAGTGTCTTGCAGCAGATGAAAAAAGAAGGAAGTATTAATATTATGCACATATTACTGCCCTGCCTCCAACAATCACAAGCTGAGCACCAACTTCTGGCAGCAAATTTGTTGCTTCAACTAGACCAGCTGGAAGACTCATCTGGCAGAAGCATGTTTAGAGAAGAGGCTATGGAGGTCCTCCTTGAGTCAATGGTGTGTGAAGAGAACTCTGCTACACAGATATTATCTGCATTCATTTTGTCAAATCTTGGTGGAACCTATTCTTGGACAGGAGAACCATATACAGTAGCATGGTTGGTAAAGAAAGCAGGTCTGACCTCATTGTACCACAGGAATATGATAAGAAACTTTGACTGGTTAGATCAAAGCCTACAGGATACTGGCACTGACACTTGGTGCAGCAAGATTGGAAGAAGCATCATCAAAGGTGGAATTCCTCTTTTCCATGCTTTGGAGAAGGGTCTAAAGAGCAAGGTAAGGAGGGTTTCTCGGGACTGTCTCACAGCTATTGCATGGCTTGGCTATGAAATTGCAACGACCCCAAATGAGCTGAGATATTCTGCGTGTGAGATCTTATTGAGTGGAATTGAGCAATTTTTGCACCCTGGATTGGATCTTGAAGAAAGACTTCTAGCATGTCTATGCATTTATAACTATACATCTGGTAAAGGAATGCAAAAGCTAATACATTTCTCAGAAGGAGTTCGGGAATCACTGGGACGCCTTTCAAACATAACCTGGATGGCAGAGGAGTTACTGAAAATAGCTGATTATTTCCTGCCCTATAAATCGCATATATCTTGTGTTCACACACAAATTCTGGAGATGGGTCGCAAATGCAGTGGAGCTGTAACTGCTCTCATCTACTACAGGGGACAACTTTGCAGTGGATACTCTGATGGTTCAATTAAGGTGTGGGACATCAAGGGGCAATCAGCCACTCTAGTATTGGATATTAAGGAGCACAGAAAGGCTGTGACATGTTTTTCACATTTTGAACCAGGGGACAGCCTTCTAAGTGGATCTGCTGATAAAACCATCAGAGTCTGGCAAATGGTCAAAAGGAAAATGGAATGCACTGAAGTAATATCAACGAAGGAACCAGTTCAGAATCTAGATACTCATGGCCAACTGATTTTTACAGTTACCCATGGCCATGGAGTGAAGGTGTTTGATGCATCACGAAAAGTCAAAGACATTTGCAAGAGTAAACATGTGAAATGCGTAAGGGTGGTTCAAGGAAGGCTTTATATAGGTTGCATGGATTCAAGCATACAGGAGGTAGTCATAACAAGAGCTCGTGAGCAAGAGATCAGAGCACCAGCAAAGAGTTGGAGGATGCAAAACAGGCCCATCAATTCAATTGTCGTGTACAAAGATTGGCTTTATAGTGCAAGTGATATTGTTGAGGGTTCAAATTTCAAGGAATGGAAAAGGCACAGCAAGCCTCAGATGTCCATGGTACCTGATAAAGGAGCAAGTGTGCTTGCAATGGGAATTGTAGAAGACTTCATATACTTAAACTGCAGCTCATCAACAAGTATCCTTCAGATATGGTTGAGGGGGACACAGCAGAAAGCAGGGAGGTTATCAGCAGGCAGCAGAATAACAAGCCTCCTCACTGCCAATGACATTGTCCTATGTGGCACCGAAATGGGGCTAATCAAGGGCTGGATCCCACTCTAG 3825 41.62 MASISSSFSSLASTHDHERLDLQSIRALVVSVNHHIHEFLANNETRKSLKLRCSLKLRIQKQEFFEFSEHSVISNLYWGIESVEAAIRAKWPEEKTSRLKNSEQMLQVPALLDEQGTTGGISNRYIVCCSYFYLSIVRKLQRDEWQVALHFLQALMVSPRLIQTEFAPGLCENLFLTHSISERQNVAIRETAKRYKSWLMYYQVMQYGETPQRPGGYNDILSPLYTQMTKKISLFAGNYRIIQDYRKALNNSDQVSRQDIKRSSNIKCLQDILMESQSDTPTSDDSFDDNDSADGDSEAYADETQSSMEAARIKADQGRMEISDQRFQNSCCISTSFPPLHEEINEANIKKLFSGRFSRSLNDLNLSILELGVEKSHTLWSCHAQEETTWRRLEPDDFQILDCLAATSLQNYMFAQMEHNQGNGARKKHNSSRRKNLHEVCLHPEKDSHGELLRALDKAISKLWFSEGQGKYDEDSSVEVTTIYEMLTNKTGVKYTLLKDAILDQLLSSISTSKKEGIVRASVSILLTIIAGNKSVIDDIKKKGLQLGHLANALKRNVYEAATLIYLINPSPTEIKTLELLPTLMNVVCTSNNYAGGPASLPTPPAASLMIIEALIAAFDYATNSMHLAEISSPQVLSGLLDVARNNNLEELIPLATILVKCMQFDGQCRNYISQFTPMAPFIYLLRSNKRRVKLIALEFFHEILRMPRSSAISVLQQMKKEGSINIMHILLPCLQQSQAEHQLLAANLLLQLDQLEDSSGRSMFREEAMEVLLESMVCEENSATQILSAFILSNLGGTYSWTGEPYTVAWLVKKAGLTSLYHRNMIRNFDWLDQSLQDTGTDTWCSKIGRSIIKGGIPLFHALEKGLKSKVRRVSRDCLTAIAWLGYEIATTPNELRYSACEILLSGIEQFLHPGLDLEERLLACLCIYNYTSGKGMQKLIHFSEGVRESLGRLSNITWMAEELLKIADYFLPYKSHISCVHTQILEMGRKCSGAVTALIYYRGQLCSGYSDGSIKVWDIKGQSATLVLDIKEHRKAVTCFSHFEPGDSLLSGSADKTIRVWQMVKRKMECTEVISTKEPVQNLDTHGQLIFTVTHGHGVKVFDASRKVKDICKSKHVKCVRVVQGRLYIGCMDSSIQEVVITRAREQEIRAPAKSWRMQNRPINSIVVYKDWLYSASDIVEGSNFKEWKRHSKPQMSMVPDKGASVLAMGIVEDFIYLNCSSSTSILQIWLRGTQQKAGRLSAGSRITSLLTANDIVLCGTEMGLIKGWIPL* 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1845279 1854311 - Vvi5g186 Vvi5g186 786328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g186 1274 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 246 1274 - -
Vvi5g186 1274 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 4 221 - -
Vvi5g186 1274 SUPERFAMILY WD40 repeat-like 994 1271 IPR036322 GO:0005515
Vvi5g186 1274 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1032 1065 - -
Vvi5g186 1274 MobiDBLite consensus disorder prediction 277 307 - -
Vvi5g186 1274 MobiDBLite consensus disorder prediction 282 298 - -
Vvi5g186 1274 Pfam WD domain, G-beta repeat 995 1020 IPR001680 GO:0005515
Vvi5g186 1274 Pfam WD domain, G-beta repeat 1032 1063 IPR001680 GO:0005515
Vvi5g186 1274 ProSiteProfiles Trp-Asp (WD) repeats profile. 1032 1065 IPR001680 GO:0005515
Vvi5g186 1274 ProSiteProfiles Trp-Asp (WD) repeats profile. 1007 1029 IPR001680 GO:0005515
Vvi5g186 1274 Gene3D - 976 1273 IPR015943 GO:0005515
Vvi5g186 1274 Gene3D - 607 967 IPR011989 -
Vvi5g186 1274 SMART WD40_4 980 1020 IPR001680 GO:0005515
Vvi5g186 1274 SMART WD40_4 1025 1064 IPR001680 GO:0005515
Vvi5g186 1274 SMART WD40_4 1069 1105 IPR001680 GO:0005515
Vvi5g186 1274 SUPERFAMILY ARM repeat 500 952 IPR016024 -
Vvi5g186 1274 PANTHER OS04G0584500 PROTEIN 246 1274 - -
Vvi5g186 1274 PANTHER OS04G0584500 PROTEIN 4 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g186 - - - vvi:100258504 2390.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34