Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g189 AACCTTTGTCATGTTACAGTTGGCCTGCACAGAGGTCAGGCTATGATGCATAATGTTGATGTTTGTATACCTTTTAGACCACATATAGGTGCTGCACTCTTTTCTGTTCAGGAGCCTGCTGATATATTCTTTAAGCTTGATTTCCTATCAGAGAGGGTTGTTTCATTAGCTTTTAATGTCATTTCACATGTTCTGGAGACCGGCCCAGGATGGAGGCTAGTTTCCCCCAATTTTTCCTCATTGTTGGAGTCTGCAATTTTTCCGGCATTAGTGATGAATGAAAAGGATATTTCAGAGTGGGAAGAAGACAAAGACGAGTACATACAGAAGAATCTTCCATCCGATCTTGAAGAGATTTCTGGGTGGAGAGAGGACTTGTTCACAGCCAGAAAGGTGCAATAA 402 41.79 NLCHVTVGLHRGQAMMHNVDVCIPFRPHIGAALFSVQEPADIFFKLDFLSERVVSLAFNVISHVLETGPGWRLVSPNFSSLLESAIFPALVMNEKDISEWEEDKDEYIQKNLPSDLEEISGWREDLFTARKVQ* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1912865 1914014 + Vvi5g189 Vvi5g189 786331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g189 133 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 27 131 - -
Vvi5g189 133 Gene3D - 23 132 IPR011989 -
Vvi5g189 133 PANTHER IMPORTIN-7, 8, 11 27 131 - -
Vvi5g189 133 SUPERFAMILY ARM repeat 48 113 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g189 - - - vvi:100853206 177.178
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g189 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . . . . . Cma17g00394 . Car17g00365 . . . . . . . . . . . . . . . . Lsi09g01519 . . Cme11g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010694 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 5 32