Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g193 | ATGGAGGATGAACCGTGCTTCGAGTGCCTTCAGCGTCGATTTCAATCCGATTTCTCCAACAAACTGATATTCTCCTATGGCGTCTCCGATTCTGGCCTCCCCTTCGGCTCTGGTGCCGTTGTTCAGATGGCCAATCCTAATGGAGAGGCGGCGTCAGCTGAGTTCATATTGGTGTGTATGCCCACTCATGCTAACGATTGCCTCGCCAAATACGTTGATGAGTATTTTATGGAAAATCCTGAAGGCAGTTACAAGGAGGGGATTGGTGACATCATTGTATCAGAAATAAATCAACATCAAGCAGAGGTTGGTGTTCCAAATCTCACTGATGAAACTGCTTCTTCAGATTCTTTATTGAACAGATCTGAGTCTTTGTTGAATGGTGATAGAAAAATAATCCTGGCTGGATTAAGGTCCAGAAGTTCTAAATGTAACCATTCCAGTAGGTTTTCTTGTTCAAGGATGATTAGCGCATTGGCCCCAGTTGCTCGGATTGGCATTTGTTCTGACTTCATATTTGAAGAGCTTGCTTCCGACTTCTCATCTGGGTCTGTGGAAGATCATGTATTGTGCTCACTTAGCCTTCTGATTGAAGGAAAAGCAACCGGTCGAGATAGCATAAACTTTCTTAATTTAGTTGGCATACCATCATTCAATGAGGATATCTTCCCTGGTTGTCTGATGCATCCAAACATAGCCCCCATTCTTGGAATGCTAAAAACATCTGATTATGTTAATTTAGTGCTTCCAAAAGCTCCTTATACCTTGGAAAACATTCTTCATTATAGCCCCAATGCCTTAAATTCCGAGTGGCATATGAAGTTTTTGATTTATCAGCTACTCTCTGCTCTAGCTTATATCCATGGTTTAGGGGTTACCCATGGCAATATATGCCCATCTAATGTAATGTTGACTGATTCATGCTGGTCTTGGCTGCGCATTTGCTGTCCTTCTCAAGATCTTTATGCTGATTTGAAGCTTTCCCCATCTATAGATTGGCATTTGAATTTTGATCGGTGGTGGAGGGGAGATCTAAGTAATTTTGAGTACCTACTCATCTTAAACAGGTTAGCTGGGAGAAGGTGGGGAGATCACACATTCCACACGGTAATGCCATGGGTAATAGATTTCAGCATAAAACCTGATGAGAATGTTGATGAAGGGTGGCGGGATTTAAGCAAGAGCAAATGGCGGTTGGCAAAAGGTGATGAGCAATTGGACTTCACGTATTCAACTTCTGAAATCCCACATCATGTATCAGAGGAGTGCCTTTCTGAACTTGCTGTATGTAGTTATAAAGCAAGGAGGTTACCTTTGAGTGTTCTGCGTCTGGCTGTCCGTTCAGTCTATGAGCCTAATGAGTATCCTTCCAATATGCAAAGACTTTATCAATGGACCCCAGATGAATGCATCCCAGAGTTCTACTGTGATCCTCAAATTTTTCGTTCTCTGCACTCTGGTATGGCTGATTTAGCAGTACCCTCATGGGCAAGAAGTCCTGAGGAATTCATTAAAGTGCATCGAGATGCGTTAGAAAGTGACCGAGTCTCATGCCAAATCCATCATTGGATTGATATCACCTTTGGATACAAAATGTCCGGCCAGGCAGCTTTGGCTGCCAAGAATGTTATGCTGCCTTCAACAGAGCCCATGATGCCAAGTGAATTAGTGGGTGAGAAACCTCTCCTTCCTCAAACTGTGTATTTACAAGACTTAGAAGAAGCAGCTGCATTTTCTGAACATGCTTGGCATTTGAGTCCTCTCTATTGCTATCATCCCAAAAATCTTGCTGATGATGTCTCATCTGTAGAAGAGCCACCAAGTGAGAGTTCTAAAAAAGGCATATCTAAGACACCTGAACTTGGCAACAAGAATGGGGTCCCATCTGAGATTGATTTAAATTATCTTCTTGATTATATTGAAGTGGATGATGAAGGTTCTGTGGGATATCAAGAGTTATTACTTTGGAGGCAGAAGTCATATTGTTCAAAGGCTCTTTCTGAAGATGTTGCCAAGGACATATTTTCTGTTGGTTGCATTTTAGCAGAACTTCACTTGAGGAGGCCACTTTTTGATTCAACATCACTAGCCATGTACTTAGAGAATGGCATCTTACCTGGATTAATACAGGAACTTCCTCCTCACACTAAAGCACTTGTTGAAGCATGCATTCTGAAGGATTGGAGAAGGAGGCCCTCTGCCAAAAGCCTTTTCGAATCTCCATACTTTCTCACAACAGTCAGGTCATCCTACTTGTTTGTTGCCCCACTTCAGCTTTTAGCAAAAGATGGATCGCATCTTCGATATGCTGCAAATTTTGCAAAACAAGGAGCCTTGAAAGCAATGAGAGCATTTGGAGCTGAAATGTGTGCTCCCTATTGCTTGCCACTTGTGGTGGCTCCATTATCAGATACTGAGGCCGAGTGGGCTTATATACTTCTAAAAGAGTTCTTAAAATGTTTGAAGTCAAAAGCAGTAAAGTCATTGGTCTTGCCTGCCATCCAGAAGATTCTACAGGCTAGTTATTCACATTTGAAAGTTTCTCTTCTCCAAGACTCATTTGTGCGGGAGGTATGGAACCGGGTTGGTAAACAAACATATCTGGAGATGGTGCATCCTTTGGTGATATCAAATTTGTTTGTTGCTCCTCATAAGAGTTCAGCTTCTGCTGCTTCTGTTCTGCTGATTGGCTTTAGTGAAGAGCTTGGAGTACCGATAACAGTTCATCAGACAGTCTTGCCTCTGATTCACTGTTTTGGGAAAGGACTCTGCACTGATGGAATTGATGTGCTGGTTAGAATAGGTGGACTTTTTGGGGAGAACTTCATTGCCAGACATATTCTACCATTGCTGAAAAACGTTGTCCGTTATTGTATTGATGTTTCATCTATGAATAAGCCTGAGCCTATGCAGAGCTGGAGTGCTTTAGCCCTTATTGATTGTCTAATGGCATTCGAAGGTCTTGTTACAGTCTTGCCAAAGGAGGCAGTTGTAAAGGAGCTTACTGAAGATCAAAGTTTTGTGCATGTTATGGTCCTTATGCAGGCGAATTTGGAAATTCCAGTGCTCCAGGTTGCTGCTAACTATCTTATTGCACTCTGTCAGCGGATTGGACCAGATTTAACAGCTTTTCATGTTCTGCCAAAACTCAAAGAGCTGTTTGATGAGCTTGCTTTTTCTCAGGAAACTGCCAATGGATCTGGCTCTCTAGGAAGAGCCTTGAAGTTTTCCAAATCAAAAGTAGATGAGGATGCTCAAATGGGAAGCCGTATGGACCTTGTGTTGCTTTTATATCCTTCTTTTGCATCTCTTCTTGGAATAGAGAAACTTCGCCAGTGTTGTGCTACATGGTTGCTTCTTGAACAATACCTTCTACGCTGTCATAATTGGAAGTGGGAACATACAGGTGAATCATCTCGAACTGGTGCAGAAAATATAAGTGCTAATAGGCCCATTTTCAGCAAAGGCTCTGTGTCTGAGTACAATCCTGCTAAACTGTTGCTTAATGGAGTTGGGTGGTCAATACCACAGTCACAAGGAATTAGAGGTGCTAAAAACTTGATTGCTCAAAAAAGGTTTTATAGTCTTCATCAGGACCCAGTTCAAAGGCATGCAGCATCTTCAAGCATTGGGAAGCGTGAACCCTGGTTCTGGTTCCCTAGTCCCGCTGCTAGCTGGGATGGTCCTGATTTTCTTGGTCGTGTAGGGGGTCTAAAAGATGAACTTCCATGGAAGATCAGAGCCTCTGTTATACACTCTGCACGTGCCCATCATGGAGCTCTGAGATCTTTAGCTGTTTGCCAAGATGAGTGTACAGTTTTCACTGCTGGAGTTGGCCCAGGATTCAAGGGAACTATTCAGAGGTGGGAATTGACCGGAATTGACTGCGTCTCTGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAGTATTTTCTGAACCATCAGCAGACTCTCTGCATCTTGCAAGTCCTTTATCTTCTGCATCAAAGATTAACAATGACCAAGCCAATATGCTGAATCCCAATTCATTGACAAGTGGGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGATTCATTGATGTTGTGCAAGGTCAAAAACTTCATTTGTGGAGAAGTGAATCTATCGATTCTGGGTTCCCTTCTTTTGTCTCTGCTGTTTGTTCATGTGGATCTGACAGAATGCAAGTAGATGGAGCTTCTGCTTTACCATCTTGGATTGCAGCTGGATTTAGTTCTGGTAGTTGCAGGTTGCTTGATGTGAGGAGTGGCAATCTGATTGCCTCTTGGCGTGCTCATGATGGATATATCACAAAGTTGGCTGCACGGGAGGATCATCTGCTCGTGTCCAGCTCTCTTGATAGGACTTTACGAATTTGGGACCTCAGAAGGGGTTGGTCAGCAGAACCTATCATTTTCAGAGGTCATACAGATGGTGTATCTGGATTTTCTGTATGGGGCCAAGATATAATTTCAATTTCCAAAAACAAGATTGGACTCTCTTCTTTATCCAGATCTGCAGATGAGGAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGAACAAGACACTTGTCAGTGCTATCAAGCATAAGCATTCTGCCCTTCTCACGTTTATTTCTTGTTGGAACTGAAGATGGTTACCTGAGAATCTGCTGTTAG | 4830 | 42.67 | MEDEPCFECLQRRFQSDFSNKLIFSYGVSDSGLPFGSGAVVQMANPNGEAASAEFILVCMPTHANDCLAKYVDEYFMENPEGSYKEGIGDIIVSEINQHQAEVGVPNLTDETASSDSLLNRSESLLNGDRKIILAGLRSRSSKCNHSSRFSCSRMISALAPVARIGICSDFIFEELASDFSSGSVEDHVLCSLSLLIEGKATGRDSINFLNLVGIPSFNEDIFPGCLMHPNIAPILGMLKTSDYVNLVLPKAPYTLENILHYSPNALNSEWHMKFLIYQLLSALAYIHGLGVTHGNICPSNVMLTDSCWSWLRICCPSQDLYADLKLSPSIDWHLNFDRWWRGDLSNFEYLLILNRLAGRRWGDHTFHTVMPWVIDFSIKPDENVDEGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSEECLSELAVCSYKARRLPLSVLRLAVRSVYEPNEYPSNMQRLYQWTPDECIPEFYCDPQIFRSLHSGMADLAVPSWARSPEEFIKVHRDALESDRVSCQIHHWIDITFGYKMSGQAALAAKNVMLPSTEPMMPSELVGEKPLLPQTVYLQDLEEAAAFSEHAWHLSPLYCYHPKNLADDVSSVEEPPSESSKKGISKTPELGNKNGVPSEIDLNYLLDYIEVDDEGSVGYQELLLWRQKSYCSKALSEDVAKDIFSVGCILAELHLRRPLFDSTSLAMYLENGILPGLIQELPPHTKALVEACILKDWRRRPSAKSLFESPYFLTTVRSSYLFVAPLQLLAKDGSHLRYAANFAKQGALKAMRAFGAEMCAPYCLPLVVAPLSDTEAEWAYILLKEFLKCLKSKAVKSLVLPAIQKILQASYSHLKVSLLQDSFVREVWNRVGKQTYLEMVHPLVISNLFVAPHKSSASAASVLLIGFSEELGVPITVHQTVLPLIHCFGKGLCTDGIDVLVRIGGLFGENFIARHILPLLKNVVRYCIDVSSMNKPEPMQSWSALALIDCLMAFEGLVTVLPKEAVVKELTEDQSFVHVMVLMQANLEIPVLQVAANYLIALCQRIGPDLTAFHVLPKLKELFDELAFSQETANGSGSLGRALKFSKSKVDEDAQMGSRMDLVLLLYPSFASLLGIEKLRQCCATWLLLEQYLLRCHNWKWEHTGESSRTGAENISANRPIFSKGSVSEYNPAKLLLNGVGWSIPQSQGIRGAKNLIAQKRFYSLHQDPVQRHAASSSIGKREPWFWFPSPAASWDGPDFLGRVGGLKDELPWKIRASVIHSARAHHGALRSLAVCQDECTVFTAGVGPGFKGTIQRWELTGIDCVSGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKLIKVFSEPSADSLHLASPLSSASKINNDQANMLNPNSLTSGILTSAFDGSLYTCMHLLESVEKLVVGTGNGSLRFIDVVQGQKLHLWRSESIDSGFPSFVSAVCSCGSDRMQVDGASALPSWIAAGFSSGSCRLLDVRSGNLIASWRAHDGYITKLAAREDHLLVSSSLDRTLRIWDLRRGWSAEPIIFRGHTDGVSGFSVWGQDIISISKNKIGLSSLSRSADEEGQHWVTPQKLYMPDRGTRHLSVLSSISILPFSRLFLVGTEDGYLRICC* | 1610 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1938562 | 1950410 | - | Vvi5g193 | Vvi5g193 | 786335 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g193 | 1609 | SUPERFAMILY | Protein kinase-like (PK-like) | 227 | 309 | IPR011009 | - | |
| Vvi5g193 | 1609 | Gene3D | BEACH domain | 334 | 566 | IPR036372 | - | |
| Vvi5g193 | 1609 | SMART | Beach_2 | 337 | 565 | IPR000409 | - | |
| Vvi5g193 | 1609 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1481 | 1516 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | Gene3D | Transferase(Phosphotransferase) domain 1 | 645 | 751 | - | - | |
| Vvi5g193 | 1609 | PANTHER | GH12955P | 2 | 1609 | - | - | |
| Vvi5g193 | 1609 | Pfam | Beige/BEACH domain | 339 | 549 | IPR000409 | - | |
| Vvi5g193 | 1609 | SUPERFAMILY | BEACH domain | 321 | 550 | IPR036372 | - | |
| Vvi5g193 | 1609 | Gene3D | - | 1433 | 1609 | IPR015943 | GO:0005515 | |
| Vvi5g193 | 1609 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 1481 | 1516 | - | - | |
| Vvi5g193 | 1609 | SMART | WD40_4 | 1375 | 1412 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | SMART | WD40_4 | 1247 | 1290 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | SMART | WD40_4 | 1474 | 1512 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | SMART | WD40_4 | 1567 | 1609 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | SMART | WD40_4 | 1293 | 1330 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | ProSiteProfiles | BEACH domain profile. | 325 | 595 | IPR000409 | - | |
| Vvi5g193 | 1609 | CDD | Beach | 338 | 550 | IPR000409 | - | |
| Vvi5g193 | 1609 | SUPERFAMILY | Protein kinase-like (PK-like) | 669 | 772 | IPR011009 | - | |
| Vvi5g193 | 1609 | SMART | serkin_6 | 171 | 743 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi5g193 | 1609 | MobiDBLite | consensus disorder prediction | 600 | 623 | - | - | |
| Vvi5g193 | 1609 | Pfam | WD domain, G-beta repeat | 1475 | 1512 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | Pfam | WD domain, G-beta repeat | 1295 | 1330 | IPR001680 | GO:0005515 | |
| Vvi5g193 | 1609 | Gene3D | - | 1244 | 1430 | IPR015943 | GO:0005515 | |
| Vvi5g193 | 1609 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 1499 | 1513 | IPR019775 | - | |
| Vvi5g193 | 1609 | ProSiteProfiles | Protein kinase domain profile. | 119 | 743 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi5g193 | 1609 | SUPERFAMILY | WD40 repeat-like | 1250 | 1607 | IPR036322 | GO:0005515 | |
| Vvi5g193 | 1609 | Pfam | Protein kinase domain | 227 | 306 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi5g193 | 1609 | CDD | PKc | 227 | 307 | - | - | |
| Vvi5g193 | 1609 | Gene3D | Transferase(Phosphotransferase) domain 1 | 224 | 332 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g193 | K17601 | WDR81; WD repeat-containing protein 81 | - | vvi:100853627 | 3200.61 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g193 | . | . | . | . | . | . | . | . | Cmo08g01267 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Bda13g00238 | . | . | . | . | . | . | . | Cma08g01304 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009197 | 1 | 3 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 34 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 76654 | PF02138 | Beach | 3.50E-44 | No_clan | Vvi | PK |