Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g199 ATGATGAAAAGACACTTTCATGTGGATAAGGTAGAAGTTGATTTGGCACTTTCAGCACACGCGAATGCTCGGCGGTGGTATGAACAGAAGAAAAGGCAGGAAAACAAGCAGGAAAAGACTATTATAGCTCATGAAAAAGCTTTTAAAGCTGCTGAAAAGAAGTCTTGCGTCCAGCTTTCACAGGTAGGAGAACATTACATTCACTGGTTTGAGAAATTTAATTGGTTCATCAGCAGTGAGAATTATTTGGTTATCAGTGGACGTGATGCTCAACAGAACAAGATGATTGTCAAGCGTTATATGTCAAAAGGGGACCTATTCATACATTTCAAATCAACCAACAACAACTCCTCATCAACATTTTTGTTTTTCCAAAGGCACCTAAACACCTGTTGCAGAATACCACTCAACTACTCTTCCTTATTTATTGTTTGTCACAGCCAGGCGTGGGATTCAAAGATTGTCACAAGTGCTTGGTGGGTTTATCCTCACCAGGTCAGTAAAACTGCTTCTACTGGGGAATATCTTACAGTTGGGAGTTTCATGATCCGTGGGAAGAACTTTCTTCCTCCACACCCTCTTATGATGGGCTTTGGCTTGTTATTTTGCTTAGATGAGAGCTCCTTGGGATCACATTTAAATGATAGGCGGGTGAGAGGTGAGGAGGAAGGGGCACAAGATTTTGAGGAGAATGAATCTCTTAAAGGAAATTCTGATTCTGAGTCAGAGAAGGAAGAAACAGATGAAAAACGTACTGCAGAGTCAAAAAGCATAATGGATCCATCAACACATCAACCAATATTAGAAGGCTTTTCTGAAATTAGTTCTGCTCATAATGAATTGACCACCTCCAATGTTGGATCCATCAATTTGCCTGAAGTTCCTCTTGAAGAAAGGAATATGTTGAATGGAAATGATAGTGAGCATATAGATGATATTTCTGGAATACATGTTTCTTCTGTCAATCCACAACTTGAGGATTTCATTGATAGGGCTCTTGAACTTGGATCTAATACTGCATCTGGTAAGAAGTATGCTCTTGAAACTTCTCAAGTTGATTTGGAAGAACACAATCATGAAGACAGAAAGGCTAAAGTCAGAGAGAAACCTTATACTAGCTACCAAAGAGAAGTTATATATATTTCACATGGACAAGGATTTAGATGCAAGGTACATGGCAGCCATAGCAATATCCCATTTCTCCCCCAGTTTAAACAGAGGCTCATGCTCTTTGGCAATCCCATTCACTCTTATATCATAATTTGTTCCCCACTCCAATGCCAAGCTCTTGTTATCCTGTTTTACCCTTCCTTAAGCTCAAACAGAGCATCTCCTCCTATCATTTTCTTCTTAAACCCCAATGCTGATTTTGGAATTTTTAACATAATGCCATTATCAATATCAGATAGATTATTAGGCTTTCAAAGTAATCTTCTGTCATAA 1443 38.88 MMKRHFHVDKVEVDLALSAHANARRWYEQKKRQENKQEKTIIAHEKAFKAAEKKSCVQLSQVGEHYIHWFEKFNWFISSENYLVISGRDAQQNKMIVKRYMSKGDLFIHFKSTNNNSSSTFLFFQRHLNTCCRIPLNYSSLFIVCHSQAWDSKIVTSAWWVYPHQVSKTASTGEYLTVGSFMIRGKNFLPPHPLMMGFGLLFCLDESSLGSHLNDRRVRGEEEGAQDFEENESLKGNSDSESEKEETDEKRTAESKSIMDPSTHQPILEGFSEISSAHNELTTSNVGSINLPEVPLEERNMLNGNDSEHIDDISGIHVSSVNPQLEDFIDRALELGSNTASGKKYALETSQVDLEEHNHEDRKAKVREKPYTSYQREVIYISHGQGFRCKVHGSHSNIPFLPQFKQRLMLFGNPIHSYIIICSPLQCQALVILFYPSLSSNRASPPIIFFLNPNADFGIFNIMPLSISDRLLGFQSNLLS* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2014664 2033653 + Vvi5g199 Vvi5g199 786341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g199 480 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 7 375 - -
Vvi5g199 480 Pfam NFACT protein RNA binding domain 72 185 IPR008532 -
Vvi5g199 480 MobiDBLite consensus disorder prediction 220 257 - -
Vvi5g199 480 PANTHER - 7 375 - -
Vvi5g199 480 MobiDBLite consensus disorder prediction 220 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g199 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - vvi:100267050 588.571
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g199 Blo01g00045 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4 5