Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g213 ATGTACTCAGTTGCACTGCCTTCTTGCCACCTTATTTTCTTAAAGCATTTTGAAGGTGACTTATCAGAATTGGAACTTTATTTTGTTATTGTAAATAATGAATACGGGGAACAAACAGAGGAGGGGCTGCTTCCTGGAGGAAAAAATATCCGTGTTACTAATGAGAATGTCATCACATTTATTCATCTTATAGCAAACCATCGTTTGAATTTTCAGATACGTCAGCAAAGTTCTCATTTCTTGATGGGTTTTCAGCAACTTATACAAAGAGATTGGATTGAAATGTTTGATGAGCATGAACTTCAGGTACTGTATATCCATGCAGATCTACATGGAGCTTCAAGTACTGTGATCGAGAACCACAAGCCTGAACATCCAGTACCCCCTCTTACTTTGAGCCAAGCAGGATGTTTCACTGTTTGTCACAGCCAGGCGTGGGATTCAAAGATTGTCACAAGTGCTTGGTGGGTTTATCCTCACCAGGTCAGTAAAACTGCTCCTACTGTGGAATATCTTACAGTTGGGAGTTTCATGATCCGTGGGAAGAAGAACTTTCTTCCTCCACACCCTCTTATGATGGGCTTTGGCTTGTTACTTTGCTTAGATGAGAGCTCCTTGGGATCACATTTAAATGAAAGGCGGGTGAGAGGTGAGGAGGAAGGGGCACAAGATTTTGAGGAGAATGAATCTCTTAAAGGAAATTCTGATTCTGAGTCAGAGAAGGAAGAAACAGATGAAAAACGTACTGCAGAGTCAAAAAGCATAATGGATCCATCAACACATCAACCAATATTAGAAGGCTTTTCTGAAATTAGTTCTGCTCATAATGAATTGACCACCTCCAATATGATATTTCTGGAATACATGTTTCTTCTGTCAATCCACAACTTGAGGATCTCATTGATAGGGCTCTTGAACTTGGATCTAATACTGCATCTGGTAAGAAGTATGCTCTTGAAACTTCTCAAGTTGATTTGGAAGAACACAATCATGAAGACAGAAAGGCTAAAGTCAGAGAGAAACCTTATACTAGCTACCAAAGTCAGAGAAAAAAATGAACACAAATTTTGCGCCTATAACAAAAGAAAACACTTCATTCCATTTGTTTAG 1110 39.19 MYSVALPSCHLIFLKHFEGDLSELELYFVIVNNEYGEQTEEGLLPGGKNIRVTNENVITFIHLIANHRLNFQIRQQSSHFLMGFQQLIQRDWIEMFDEHELQVLYIHADLHGASSTVIENHKPEHPVPPLTLSQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTVEYLTVGSFMIRGKKNFLPPHPLMMGFGLLLCLDESSLGSHLNERRVRGEEEGAQDFEENESLKGNSDSESEKEETDEKRTAESKSIMDPSTHQPILEGFSEISSAHNELTTSNMIFLEYMFLLSIHNLRISLIGLLNLDLILHLVRSMLLKLLKLIWKNTIMKTERLKSERNLILATKVREKNEHKFCAYNKRKHFIPFV* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2164749 2168736 - Vvi5g213 Vvi5g213 786355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g213 369 PANTHER - 104 353 - -
Vvi5g213 369 SUPERFAMILY Hect, E3 ligase catalytic domain 10 106 IPR035983 GO:0004842
Vvi5g213 369 MobiDBLite consensus disorder prediction 214 254 - -
Vvi5g213 369 Pfam NFACT protein RNA binding domain 99 181 IPR008532 -
Vvi5g213 369 Pfam HECT-domain (ubiquitin-transferase) 19 104 IPR000569 GO:0004842
Vvi5g213 369 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 104 353 - -
Vvi5g213 369 ProSiteProfiles HECT domain profile. 10 105 IPR000569 GO:0004842
Vvi5g213 369 MobiDBLite consensus disorder prediction 214 261 - -
Vvi5g213 369 Gene3D Hect, E3 ligase catalytic domain 8 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g213 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - vvi:100267050 352.443
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g213 Blo01g00043 . . . . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 Cone14ag0699 . . . . . . . . . . . Bpe05g00808 . . . . . . . Cma17g00387 . Car17g00357 . . . . . . . . . . . . . . . . . . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4 5