Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g219 ATGGAACCCTTTTCTGTGCTGATTGCCCCAACATTTAGCCATTTCTTCACGGGGATCATTTTAATCATGGTTGTTGATTGCTCAGATATCATTCAAGAAGCTGTTATCGAGTCTTCCACGATCAAGTTTGTCCCAAGCATCCGATCTGGTAGCTATGCTGACATTGGGCTGCGAAAATCCATGGAGGATGAGCACATTAGGATTGATGATCTTTCTGCTGAGGTGGGGCCCCTCTTCAGGTGTTCACTTCCAAGTGCCTTCTATGCAGTGTTTGATGGGCATGGAGGCCCTGAAGCAGCAGCTTATATCAAGAGGAATGTCATGAGGCTGTTTTTTGAAGATGTTGATATACCACAAATGTCTGAAATTAATGATATTTTCTTAGAGGAATTGGAAAATTGTCATCGCAAGGCATTTTTATTGGCTGATCTTGCCTTGGCTGATGAATGCACTGTTAGCAGTTCATGTGGAACAACAGCCTTGACCGCTCTAATACTCGGAAGGCATCTACTAGTGGCCAATGTTGGTGACTGTCGAGCAGTTCTCTGCAGGAAAGGACAAGCAGTCCAGATGTCTCAAGATCACAGACCGAGTTATCTCCCAGAGTGCAAGCGTGTCGAGGCCGTAGGTGGTTACATTCTCGACGGGTATCTCAACGATCTCTCCGTCACCCGAGCCCTCGGAGACTGGGGAATGAAATTCCCTGATGGTTCTCCATCACCTCTCATTGCTGAGCCAGACTTTCGACAGATTATTCTAACAGAAGACGATGAGTTCCTGATTATTGGCTGCGATGGGATCTGGGATGCCATGCCGAACCAGCATGCAGTCAGCCTGGTTCGCCGTGGAATGAGGCGGCACAACAACCCGCAGCAGTGTGCTAGAGACCTCGTCATGGAAGCATTACGGCTACACACACCGGATAATCTCACTGCGATTGTCATCTGCTTCTCTTCCCCCGATCACAGTGAGGCATTCCCACCACCACAGAGGCTGAGGTTCAGATGCTGTAGTCTCTCCGAGGAAGCCCGAAACAGGCTGAAGAGCTTGCTGGAAGGCTAA 1062 48.68 MEPFSVLIAPTFSHFFTGIILIMVVDCSDIIQEAVIESSTIKFVPSIRSGSYADIGLRKSMEDEHIRIDDLSAEVGPLFRCSLPSAFYAVFDGHGGPEAAAYIKRNVMRLFFEDVDIPQMSEINDIFLEELENCHRKAFLLADLALADECTVSSSCGTTALTALILGRHLLVANVGDCRAVLCRKGQAVQMSQDHRPSYLPECKRVEAVGGYILDGYLNDLSVTRALGDWGMKFPDGSPSPLIAEPDFRQIILTEDDEFLIIGCDGIWDAMPNQHAVSLVRRGMRRHNNPQQCARDLVMEALRLHTPDNLTAIVICFSSPDHSEAFPPPQRLRFRCCSLSEEARNRLKSLLEG* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2201429 2203055 - Vvi5g219 Vvi5g219 786361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g219 353 SMART PP2C_SIG_2 63 317 IPR001932 -
Vvi5g219 353 Gene3D - 34 324 IPR036457 -
Vvi5g219 353 CDD PP2Cc 47 317 IPR001932 -
Vvi5g219 353 SUPERFAMILY PP2C-like 39 319 IPR036457 -
Vvi5g219 353 PANTHER PROTEIN PHOSPHATASE 2C 24 337 IPR015655 GO:0004722|GO:0006470
Vvi5g219 353 Pfam Protein phosphatase 2C 56 309 IPR001932 -
Vvi5g219 353 PANTHER PROTEIN PHOSPHATASE 2C 13-RELATED 24 337 - -
Vvi5g219 353 SMART PP2C_4 38 315 IPR001932 -
Vvi5g219 353 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Vvi5g219 353 ProSiteProfiles PPM-type phosphatase domain profile. 48 317 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g219 Vvi7g449 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14830 PF00481 PP2C 1.80E-60 CL0238 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g219 K14803 - vvi:100240944 659.833