Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g227 ATGGAAATGTATGTTTCTGAAAATGGAAATGCAGAAACTTATCTGATTCAAGGTACAGAGTCAAACCCACTTTTAACAACGCAACTTGTTGAACAAATTCAAGCTATGTATAACGAGGGAACCCCAGAGTTTGTTGTTGATCAGAACTTGTATTATCCTACTGCCACCAACTATGGGTATTACTGTACAGGATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCGGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGATATGCACAGTCACCATACAACCCATACAATCCTTACATACCTGGTGCCATGATAGGAGTTGATGCCCCATTTGTTGGGACGCAACAATATTACACAATGCCTCCTTATCAAAACCCCGTCTCTTCACCTGCTTATATCCCCATTGTTGTTCAATCTAGACCAGATATCATTCCAAATAGTTCACCTGATCCCTTGTTAGATACTGGTTTAGCTGCTGCTAATAGGCCTGATGGACGAGGTCGAAAACATAATCTTTCTTCAGCATCTGCAGCCTTTACCATGCCTTCTCAAAGACCTGCTTCAAATCAAACACATTCCTTTACCAGGGTATCAGATGTGCCAAGAGCTATTGCCGGATCAAGTAAGCAGCCTGTGACACATGGAAGTGTTACTTCCGGTAGTTTTCCAGGTCCAGCGTCATCGCATGCCCTCCAGGGTAGAAGTACGCCTGACTCAATTCAGGCTATGGATAATGTTCCACATGGAAGGGTTCTGCCTCATCACAACCAATTAAAACTTGCTATCCCTTCTGGTAATGGCATGTCTGACTTTGGATCTAATGCTCAACTCCGAGCCCCCATGGATAAGTTTCGTCCAAAGTTTAATTATGGCAGAGCTCAGAATGATGCAAATGGAAGCCAAGATGGGCTGAGTGAACAGAATCGTGGCCCTAGAATCAACAGATCGGAAAATCAGTTGGCTGTTAAAGCTTACACAACTAAGGCAGGAGATACTAATGCACAAGGAAACATCATTATCTATACTGATCAGTACAACAAGGATGACTTCCCAGTTGACTATGTGGATGCAAAGTTCTTTGTGATCAAATCATACAGTGAGGATGATGTACACAAAAGCATTAAATATAATGTGTGGTCATCTACACCCAATGGGAACAAGAAGCTGGAAAATGCTTATGAAGATGCACAGAGGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTGTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTTGATTTCCATAAGGATATGGACTTCTGGCAGCAAGATAAGTGGAGTGGAAGCTTCCCTGTCAAGTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAACGAAGACATCTTTACTTGATGACTTTATGTATTATGAAAACCGACAGAGGATCATGCAAGATGAGAAAACCAGGCTGCTTATTAAAAGCTATGAAAGCCCATTCTTTGTACCTCCATTAGACCCCCCTCGGAAGCTAAATTTTTATGAATGA 1713 41.97 MEMYVSENGNAETYLIQGTESNPLLTTQLVEQIQAMYNEGTPEFVVDQNLYYPTATNYGYYCTGFESPGEWDDHHRIFGLDGPDIQYSGAQTDSLPYVYYTPSYGYAQSPYNPYNPYIPGAMIGVDAPFVGTQQYYTMPPYQNPVSSPAYIPIVVQSRPDIIPNSSPDPLLDTGLAAANRPDGRGRKHNLSSASAAFTMPSQRPASNQTHSFTRVSDVPRAIAGSSKQPVTHGSVTSGSFPGPASSHALQGRSTPDSIQAMDNVPHGRVLPHHNQLKLAIPSGNGMSDFGSNAQLRAPMDKFRPKFNYGRAQNDANGSQDGLSEQNRGPRINRSENQLAVKAYTTKAGDTNAQGNIIIYTDQYNKDDFPVDYVDAKFFVIKSYSEDDVHKSIKYNVWSSTPNGNKKLENAYEDAQRIALGKRRGCPIFLFFSVNASGQFCGVAEMIGPVDFHKDMDFWQQDKWSGSFPVKWHIIKDVPNTNFRHIILENNENKPVTNSRDTQEIRFKQGLEMLKIFKNHTTKTSLLDDFMYYENRQRIMQDEKTRLLIKSYESPFFVPPLDPPRKLNFYE* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2377859 2383123 - Vvi5g227 Vvi5g227 786369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g227 570 MobiDBLite consensus disorder prediction 311 333 - -
Vvi5g227 570 MobiDBLite consensus disorder prediction 308 333 - -
Vvi5g227 570 MobiDBLite consensus disorder prediction 224 254 - -
Vvi5g227 570 PANTHER OS03G0317000 PROTEIN 7 563 - -
Vvi5g227 570 MobiDBLite consensus disorder prediction 227 254 - -
Vvi5g227 570 Pfam YT521-B-like domain 375 517 IPR007275 GO:0003723
Vvi5g227 570 Gene3D ph1033 like domains 356 531 - -
Vvi5g227 570 ProSiteProfiles YTH domain profile. 375 516 IPR007275 GO:0003723
Vvi5g227 570 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 7 563 IPR045168 -
Vvi5g227 570 MobiDBLite consensus disorder prediction 166 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g227 K20102 YTHDF; YTH domain-containing family protein - vvi:100854837 1181.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g227 . . . . . Bpe14g01080 . . . . . . . . . . . . . . . . . . Cla06g00400 Cam06g0422 Cec06g0429 Cco06g0429 Clacu06g0408 Cmu06g0408 Cre06g1188 Cone14ag0687 Cone15ag0700 . . . . . . . . . . . . Bma02g00945 . Sed08g1182 . . . . . . Cpe12g00344 . Bhi12g01981 Tan06g2807 Cmetu02g1103 . . . Lcy12g0894 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004548 2 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 42