Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g228 ATGGACATTGCTTCAATATATTCGGCTGGTTTCTCTTCTCCTACACCAATTCAGGCACAGACATGGCCAATTGCACTACAGGGTAGGGACATTGTGGCAATTGCCAAAACAGGTTCTGGGAAAACATTGGGCTATCTGATCCCTGCCTTCATTCTTCTTAGAAGGCGCCGTAATAATGTACAGAATGGCCCAACTGTGATGGTTTTGGCTCCAACCCGAGAGCTTGCCACACAAATACAAGACGAGACCATCAAGTTTGGCCGATCTTCTAGGGTCTCTTGCGCGTGCTTGTATGGTGGAACTTCAAGGAACGCTCAGCTAAAAGAACTAGATCGAGGAGCAGATGTTGTTGTGGCAACTCCTGGTCGGCTCAATGATATCCTTGAATCGAAAAAGATTGACCTTGGGCAAATTTCACTCCTTGTGCTTGATGAAGCAGATCGAATGTTGGATATGGGTTTTGAACCTCAAATCCGTAAGATTGTTAATGAGATACCTCCACGCAGGCAAACTCTTATGTATACTGCAACCTGGCCCAAAGAAGTGAGAAAAATAGCAGGTGATCTTCTTGTTAATCCTGTTCAAGTGAACATTGGCAGTGTTGATGAACTTGCTGCGAACAAGGCTATCACACAGTATGTTGAAGTAGTTTCACCACCGGAAAAGCAGAGGCGCTTGGAACAGATACTTAGATCCCAAGAACGGGGTTCTAAGGTCATCATCTTCTGTTCCACAAAGAAGTTGTGCGACCAGCTTGCACGTAGCATTGGACGTAACTTTGGGGCTGCTGTAATTCATGGAGACAAGTCTCAGGTGGAGAGAGACTGGGTTCTGAATCAGTTCCGCAGTGGAAAGTCCCCAATCTTAGTTGCCACTGATGTTGCTGCCCGGGGACTTGACATAAAAGACATAAGGGTCGTAATCAACTATGATTTCCCAACTGGAATTGAAGATTACGTCCACCGAATCGGACGAACCGGGAGGGCTGGTGCAACAGGATGGGCCTGGTTTTGGCAAAGATCGCGGTGGGGTGAACCGTTTTGA 1044 46.74 MDIASIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIFCSTKKLCDQLARSIGRNFGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGWAWFWQRSRWGEPF* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2387833 2390890 - Vvi5g228 Vvi5g228 786370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g228 347 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 225 347 IPR001650 -
Vvi5g228 347 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 336 - -
Vvi5g228 347 SMART helicmild6 250 330 IPR001650 -
Vvi5g228 347 Pfam Helicase conserved C-terminal domain 222 330 IPR001650 -
Vvi5g228 347 Pfam DEAD/DEAH box helicase 15 185 IPR011545 GO:0003676|GO:0005524
Vvi5g228 347 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 6 336 - -
Vvi5g228 347 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 196 IPR014001 -
Vvi5g228 347 Gene3D - 3 199 IPR027417 -
Vvi5g228 347 SMART ultradead3 10 213 IPR014001 -
Vvi5g228 347 CDD SF2_C_DEAD 210 336 - -
Vvi5g228 347 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 142 150 IPR000629 -
Vvi5g228 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 338 IPR027417 -
Vvi5g228 347 Gene3D - 200 342 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g228 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - vvi:100252874 631.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g228 Vvi7g405 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g228 . . . . . . . . . . . Cma14g01570 . Car14g01384 . Cpe08g00137 Cpe03g01312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01604 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004392 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 42