Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g230 ATGGCTGTGGAAACTGAAGCTGCGACTCCGGGCTTGGCCCTAGCTGAAACCGACATCAACTGGAACAGGTTGGACAAGACAAGGTTTCATATCATTGGGGCCATCCTCTTTACTGCTCAGTCAGCCTTGCTGCATCCAACAGCGGTTGTAAAAACCAGAATGCAAGTAGATGGCTCTGGACTTTCTCACATGGGCGGTATATCAGTATTTAGACATATACTAAAAAGCGATGGCATCCCTGGACTATTTAGAGGTTTTGGAACATCTGCCATTGGATCCTTGCCAGGTAGGGTCCTGGCCTTGACGTCCCTTGAAGTATCAAAAGATATGATGTTCAAATACACTAAGCATCTAGACATGCCTGAAGCAACCCGAGTCGGGATTGCAAATGGGGTAGCAGGCTTGTCCTCAAATTTAGTTTCCTGTGTATACTATGTGCCTTTGGATGTGGTTTGTCAGAGGCTAATGGTACAAGGGCTACCAGGGACTGCATATTGCAGTGGGCCTTTTGATGTTGTTCATAAAGTAATGAAGGCTGAAGGGTTCCGTGGTATGTATAGAGGTTTTGGATTAACAGCTGTGACCCAATCTCCAGCGTATGCACTTTGGTGGGGTGTCTATGGTGCTGCTCAACACATGATCTGGAGGAGCTTGGACTACAGAGAAAATACAGAGAGGAAACCATCTCATTTGGAGATGGCAACTGTTCAAGCTTCAGCTGGAATTGTAGCTGGTGCTTGTTCCTCTGTTGTTACTACTCCCATAGACACTGTAAAAACACGACTCCAGGTCATGGATAATTATGGCGCTGGAAGGCCATCTGTAATGAAGACGGCAAAAACTCTTCTTAAAGAAGATGGATGGCGGGGCTTCTATAGAGGGTTTGGACCCCGCTTCTTAAATATGTCACTCTATGGAACCACGATGATTGTTACTTATGAACTGATAAAGAGATTATCCCTGAAGCAAGCGTGA 975 45.74 MAVETEAATPGLALAETDINWNRLDKTRFHIIGAILFTAQSALLHPTAVVKTRMQVDGSGLSHMGGISVFRHILKSDGIPGLFRGFGTSAIGSLPGRVLALTSLEVSKDMMFKYTKHLDMPEATRVGIANGVAGLSSNLVSCVYYVPLDVVCQRLMVQGLPGTAYCSGPFDVVHKVMKAEGFRGMYRGFGLTAVTQSPAYALWWGVYGAAQHMIWRSLDYRENTERKPSHLEMATVQASAGIVAGACSSVVTTPIDTVKTRLQVMDNYGAGRPSVMKTAKTLLKEDGWRGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSLKQA* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2399528 2403126 + Vvi5g230 Vvi5g230 786372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g230 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 213 IPR018108 -
Vvi5g230 324 Pfam Mitochondrial carrier protein 129 216 IPR018108 -
Vvi5g230 324 Pfam Mitochondrial carrier protein 237 322 IPR018108 -
Vvi5g230 324 Pfam Mitochondrial carrier protein 31 114 IPR018108 -
Vvi5g230 324 PANTHER OS01G0329400 PROTEIN 1 323 - -
Vvi5g230 324 Gene3D Mitochondrial carrier domain 121 323 IPR023395 -
Vvi5g230 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 319 IPR018108 -
Vvi5g230 324 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 323 - -
Vvi5g230 324 SUPERFAMILY Mitochondrial carrier 22 315 IPR023395 -
Vvi5g230 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 110 IPR018108 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g230 K15121 - vvi:100242630 637.876