Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g231 ATGCCCATAAAAAGCTCCTATTCTTTGCTTGGAGATCTACTCTCTCCGATCTCTCTCTCCGCTGCTGGTTTCCATCTCTTCTATAAAAAGATGGGGCTGTCTTTCACCAAACTTTTCAGTCGGCTATTTGCTAAGAAGGAGATGCGCATTCTCATGGTTGGTCTTGATGCTGCTGGTAAAACTACAATTTTGTATAAGCTCAAGTTGGGGGAAATTGTCACCACTATCCCTACCATTGGATTTAATGTGGAGACTGTGGAATATAAGAATATCAGCTTCACTGTCTGGGATGTTGGTGGTCAGGACAAGATTCGACCTTTGTGGAGACACTACTTCCAAAACACGCAAGGGCTTATCTTCGTTGTTGACAGTAATGACCGAGACCGTGTGGTTGAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAACTGAGGGATGCTGTGCTGCTTGTGTTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCAGAGATAACTGACAAGCTTGGACTTCACTCTCTCCGACAGCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGAGAAGGGCTGTACGAGGGACTGGATTGGCTTTCAAACAACATTGCTAACAAGGCTTAG 636 45.44 MPIKSSYSLLGDLLSPISLSAAGFHLFYKKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2403216 2408128 + Vvi5g231 Vvi5g231 786373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g231 211 CDD Arf1_5_like 48 206 IPR045872 GO:0003924
Vvi5g231 211 Gene3D - 34 211 IPR027417 -
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 49 72 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 77 101 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 104 129 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 149 170 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 SMART sar_sub_1 31 207 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 Pfam ADP-ribosylation factor family 35 207 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 ProSiteProfiles small GTPase Arf family profile. 41 207 - -
Vvi5g231 211 SMART arf_sub_2 31 211 - -
Vvi5g231 211 PANTHER ADP RIBOSYLATION FACTOR-RELATED 31 211 IPR024156 GO:0005525
Vvi5g231 211 PANTHER ADP-RIBOSYLATION FACTOR A1F 31 211 - -
Vvi5g231 211 TIGRFAM small_GTP: small GTP-binding protein domain 46 186 IPR005225 GO:0005525
Vvi5g231 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 209 IPR027417 -
Vvi5g231 211 SMART rab_sub_5 48 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g231 K07937 ARF1_2; ADP-ribosylation factor 1/2 - twl:119982669 368.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g231 Vvi7g439 ECH
Vvi5g231 Vvi14g59 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297