Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g238 ATGGAGGATGAACCGTGCTTCGAGTGCCTTCAGCGTCGATTTCAATCCGATTTCTCCAACAAACTGATATTCTCCTATGGCGTCTCCGATTCTGGCCTCCCCTTCGGCTCTGGTGCCGTTGTTCAGATGGCCGATCCTAATGGAGAGGCGGCGTCAGCTGAGTTCATATTGGTGTGTATGCCCACTCATGCTAACGATTGCCTCGCCAAATACGTTGATGAGTATTTTATGGAAAATCCTGAAGGCAGTTACAAGGAGGGGATTGGTGACATCATTGTATCAGAAATAAATCAACATCAAGCAGAGGATGATTACCTTCTGATTGAAGGAAAAGCAACTGGTCGAGATAGCATAAACTTTCTTAATTTAGTTGGCATACCATCATTCAATGAGGATATCTTCCCTGGTTGTCTGAGGCATCCAAACATAGCCCCCATTCTTGGAATGCTAAAAACATCTGATTATGTTAATTTAGTGCTTCCAAAAGCTCCTTATACCTTAGAAAACATTCTTCATTATAGCCCCAATGCCTTAAATTCCGAGTGGCATATGAAGTTTTTGATTTATCAGCTACTCTCTGCTCTAGCTTATATCCATGGTTTAGGGGTTACCCATGGCAATATATGCCCATCTAATGTAATGTTGACTGATTCATGCTGGTCTTGGCTGCGCATTTGCTGTCCTTCTCAAGATCTTTATGCTGATTTGAAGCTTTCCCCATCCATAGATTGGCATTTGAATTTTGATCGGTGGTGGAGGGGAGATCTAAGTAATTTTGAGTATCTACTCATCTTAAACAGGTTAGCTGGGAGAAGGTGGGGAGATCACACATTCCATACGGTAATGCCATGGGTAATAGATTTCAGCATAAAACCTGATGAGAATGTTGATGAAGGGTGGCGGGATTTAAGCAAGAGCAAATGGCGGTTGGCAAAAGGTGATGAGCAATTGGACTTCACGTATTCAACTTCTGAAATCCCACATCATGTATCAGATGAGTGCCTTTCTGAACTTGCTGTATGTAGTTATAAAGCAAGGAGGTTACCTTTGAGTGTTCTGCGTCTGGCTGTCCGTTCAGTCTATGAGCCTAATGAGTATCCTTCCAATATGCAAAGACTTTATCAATGGACCCCAGATGAATGCATCCCAGAGTTCTACTGTGATCCTCAAATTTTTCATTCTCTGCACTCTGGTATGGCTGATTTAGCAGTACCCTCATGGGCAAGAAGTCCTGAGGAATTCATTAAAGTGCATCGAGATGCGTTAGAAAGTGACCAAGTCTCATGCCAAATCCATCATTGGATTGATATCACCTTTGGATACAAAATGTCCGGCCAGGCAGCTTTGGCTGCCATGAATGTTATGCTGCCTTCAACAGAGCCCATGATGCCAAGTGAATTAGTGGGTGAGAAACCTCTCCTTCCTCAAACTGTGTATTTACAAGACTTAGAAGAAGCAGCTGCATTTTCTGAACATGCTTGGCATTTGAGTCCTCTCTATTGCTATCATCCCAAAAATCTTGCTGATGATGTCTCATCTGTAGAAGAGCCACCAAGTGAGAGTTCTAAAAAAGGCATATCTAAGACACCTGAACTTGGCAACAAGAATGGGGTCCCATCTGAGATTGATTTAAATTATCTTCTTGATTATATTGAAGTGGATGATGAAGGTTCTGTGGGATATCAAGAGTTATTACTTTGGAGGCAGAAGTCATATTGTTCAAGGGCTCTTTCTGAAGATGTTGCCAAGGACATATTTTCTGTTGGTTGCATTTTAGCAGAACTTCACTTGAGGAGGCCACTTTTTGATTCAACATCACTAGCCATGTACTTAGAGAATGGCATCTTACCTGGATTAATACAGGAACTTCCTCCTCACACTAAAGCACTTGTTGAAGCATGCATTCTGAAGGATTGGAGAAGGAGGCCCTCTGCCAAAAGCCTTTTGGAATCTCCATACTTTCTCACAACAGTCAGGTCATCCTACTTGTTTGTTGCCCCACTTCAGCTTTTAGCAAAAGATGGATCTCGTCTTCGATATGCTGCAAATTTTGCAAAACAAGGAGCCTTGAAAGCAATGGGAGCATTTGGAGCTGAAATGTGTGCTCCCTATTGCTTGCCACTTGTGGTGGCTCCATTATCAGATACTGAGGCCGAGTGGGCTTATATACTTCTAAAAGAGTTCTTAAAATGTTTGAAGTCAAAAGCAGTAAAGTCATTGGTCTTGCCTGCCATCCAGAAGATTCTACAGGCTAGTTATTCACATTTGAAAGTTTCTCTTCTCCAAGACTCATTTGTGCGGGAGGTATGGAACCGGGTTGGTAAACAAACATATCTGGAGATGGTGCATCCTTTGGTGATATCAAATTTGTTTGTTGCTCCTCATAAGAGTTCAGCTTCTGCTGCTTCTGTTCTGCTGATTGGCTCTAGTGAAGAGCTTGGAGTACCGATAACAGTTCATCAGACAATCTTGCCTCTGATTCACTGTTTTGGGAAAGGACTCTGCACTGATGGAATTGATGTGCTGGTTAGAATAGGTGGACTTTTCGGGGAGAACTTCATTGCCAGACATATTCTACCATTGCTGAAAAACGTTGTCCGTTATTGTATTGATGTTTCATCTATGAATAAGCCTGAGCCTATGCAGAGCTGGAGTGCTTTAGCCCTTATTGATTGTCTAATGGCATTCGAAGGTCTTGTTACAGTCTTGCCAAAGGAGGCAGTTGTAAAGGAGCTTACTGAAGATCAAAGTTTTGTGCATGTTATGGTCCTTATGCAGGCGAATTTGGAAATTCCAGTGCTCCAGGTTGCTGCTAACTATCTTATTGCACTCTGTCAGCGGATTGGACCAGATTTAACAGCCTTTCATGTTCTGCCAAAACTCAAAGAGCTGTTTGATGAGCTTGCTTTTTCTCAGGAAACTGCCAATGGATCTGGCTCTCTAGGAAGAGCCTTGAAGTTTGCCAAATCAAAAGTAGATGAGGAGGCTCACATGGGAAGCCGTATGGACCTTGTGTTGCTTTTATATCCTTCTTTTGCATCTCTTCTTGGAATAGAGAAACTTCGCCAGTGTTGTGCTACATGGTTGCTTCTTGAACAATACCTTCTACGCTGTCATAATTGGAAGTGGGAACATACAGGTGAATCATCTCGAACTGGTGCAGAAAATATAAGTGCTAATAGGCCCATTTTCAGCAAAGGCTCTGTGTCCGAGTACAATCCTGCTAAACTGTTGCTTAATGGAGTTGGGTGGTCAATACCACAGTCACAAGGAATTAGAGGTGCTAAAAACTTGATTGCTCAAAAAAGGTTTTATAGTCTTCATCAGGACCCAGTTCAAAGGCATGCAGCATCTTCAAGCATTGGGAAGCGTGAACCCTGGTTCTGGTTCCCTAGTCCCGCTGCTAGCTGGGATGGTCCTGATTTTCTTGGTCGTGTAGGGGGTCTAAAAGATGAACTTCCATGGAAGATCAGAGCCTCTGTTATACACTCTGCACGTGCCCATCATGGAGCTCTGAGATCTTTAGCTGTTTGCCAAGATGAGTGTACAGTTTTCACTGCTGGAGTTGGCCCAGGATTCAAGGGAACTATTCAGAGGTGGGAATTGACTGGAATTGACTGCGTCTCTGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAGTATTTTCTGAACCATCAGCAGACTCTCTGCATCTTGCAAGTCCTTTATCTTCCGCATCAAAGATTAACAATGACCAAGCCAATATGCTGAATCCCAATTCATTGACAAGTGGGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGATTCATTGATGTTGTGCAAGGTCAAAAACTTCATTTGTGGAGAAGTGAATCTATCGATTCTGGGTTCCCTTCTTTCGTCTCTGCTGTTTGTTCATGTGGATCTGACAGAATGCAAGTAGATGGAGCTTCTGCTTTACCATCTTGGATTGCAGCTGGATTTAGTTCTGGTAGTTGCAGGTTGCTTGATGCGAGGAGTGGCAATCTGATTGCCTCTTGGCGTGCTCATGATGGATATATCACAAAGTTGGCTGCACGGGAGGATCATCTGCTCGTGTCCAGCTCTCTTGATAGGACTTTACGAATTTGGGACCTCAGAAGGGGTTGGTCAGCAGAACCTATCATTTTCAGAGGTCATACAGATGGTGTATCTGGATTTTCTGTATGGGGCCAAGATATAATTTCAATTTCCAAAAACAAGATTGGACTCTCTTCTTTATCCAGATCTGCAGATGAGGAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGAACAAGACACTTGTCAGTGCTATCAAGTATAAGCATTCTGCCCTTCTCACGTTTATTTCTTGTTGGAACTGAAGATGGTTACCTGAGAATCTGCTGTTAG 4563 42.87 MEDEPCFECLQRRFQSDFSNKLIFSYGVSDSGLPFGSGAVVQMADPNGEAASAEFILVCMPTHANDCLAKYVDEYFMENPEGSYKEGIGDIIVSEINQHQAEDDYLLIEGKATGRDSINFLNLVGIPSFNEDIFPGCLRHPNIAPILGMLKTSDYVNLVLPKAPYTLENILHYSPNALNSEWHMKFLIYQLLSALAYIHGLGVTHGNICPSNVMLTDSCWSWLRICCPSQDLYADLKLSPSIDWHLNFDRWWRGDLSNFEYLLILNRLAGRRWGDHTFHTVMPWVIDFSIKPDENVDEGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRLAVRSVYEPNEYPSNMQRLYQWTPDECIPEFYCDPQIFHSLHSGMADLAVPSWARSPEEFIKVHRDALESDQVSCQIHHWIDITFGYKMSGQAALAAMNVMLPSTEPMMPSELVGEKPLLPQTVYLQDLEEAAAFSEHAWHLSPLYCYHPKNLADDVSSVEEPPSESSKKGISKTPELGNKNGVPSEIDLNYLLDYIEVDDEGSVGYQELLLWRQKSYCSRALSEDVAKDIFSVGCILAELHLRRPLFDSTSLAMYLENGILPGLIQELPPHTKALVEACILKDWRRRPSAKSLLESPYFLTTVRSSYLFVAPLQLLAKDGSRLRYAANFAKQGALKAMGAFGAEMCAPYCLPLVVAPLSDTEAEWAYILLKEFLKCLKSKAVKSLVLPAIQKILQASYSHLKVSLLQDSFVREVWNRVGKQTYLEMVHPLVISNLFVAPHKSSASAASVLLIGSSEELGVPITVHQTILPLIHCFGKGLCTDGIDVLVRIGGLFGENFIARHILPLLKNVVRYCIDVSSMNKPEPMQSWSALALIDCLMAFEGLVTVLPKEAVVKELTEDQSFVHVMVLMQANLEIPVLQVAANYLIALCQRIGPDLTAFHVLPKLKELFDELAFSQETANGSGSLGRALKFAKSKVDEEAHMGSRMDLVLLLYPSFASLLGIEKLRQCCATWLLLEQYLLRCHNWKWEHTGESSRTGAENISANRPIFSKGSVSEYNPAKLLLNGVGWSIPQSQGIRGAKNLIAQKRFYSLHQDPVQRHAASSSIGKREPWFWFPSPAASWDGPDFLGRVGGLKDELPWKIRASVIHSARAHHGALRSLAVCQDECTVFTAGVGPGFKGTIQRWELTGIDCVSGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKLIKVFSEPSADSLHLASPLSSASKINNDQANMLNPNSLTSGILTSAFDGSLYTCMHLLESVEKLVVGTGNGSLRFIDVVQGQKLHLWRSESIDSGFPSFVSAVCSCGSDRMQVDGASALPSWIAAGFSSGSCRLLDARSGNLIASWRAHDGYITKLAAREDHLLVSSSLDRTLRIWDLRRGWSAEPIIFRGHTDGVSGFSVWGQDIISISKNKIGLSSLSRSADEEGQHWVTPQKLYMPDRGTRHLSVLSSISILPFSRLFLVGTEDGYLRICC* 1521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2439088 2450560 + Vvi5g238 Vvi5g238 786380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g238 1520 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1392 1427 - -
Vvi5g238 1520 ProSiteProfiles BEACH domain profile. 236 506 IPR000409 -
Vvi5g238 1520 Gene3D - 1299 1520 IPR015943 GO:0005515
Vvi5g238 1520 Gene3D Transferase(Phosphotransferase) domain 1 557 662 - -
Vvi5g238 1520 Gene3D BEACH domain 245 478 IPR036372 -
Vvi5g238 1520 ProSiteProfiles Protein kinase domain profile. 41 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g238 1520 CDD PKc 138 218 - -
Vvi5g238 1520 SUPERFAMILY Protein kinase-like (PK-like) 580 655 IPR011009 -
Vvi5g238 1520 SMART WD40_4 1478 1520 IPR001680 GO:0005515
Vvi5g238 1520 SMART WD40_4 1204 1241 IPR001680 GO:0005515
Vvi5g238 1520 SMART WD40_4 1158 1201 IPR001680 GO:0005515
Vvi5g238 1520 SMART WD40_4 1385 1423 IPR001680 GO:0005515
Vvi5g238 1520 SMART WD40_4 1286 1323 IPR001680 GO:0005515
Vvi5g238 1520 SMART serkin_6 41 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g238 1520 ProSitePatterns Trp-Asp (WD) repeats signature. 1410 1424 IPR019775 -
Vvi5g238 1520 Gene3D - 1150 1260 IPR015943 GO:0005515
Vvi5g238 1520 SMART Beach_2 248 476 IPR000409 -
Vvi5g238 1520 Pfam WD domain, G-beta repeat 1386 1423 IPR001680 GO:0005515
Vvi5g238 1520 Pfam WD domain, G-beta repeat 1206 1241 IPR001680 GO:0005515
Vvi5g238 1520 SUPERFAMILY WD40 repeat-like 1161 1518 IPR036322 GO:0005515
Vvi5g238 1520 SUPERFAMILY BEACH domain 232 461 IPR036372 -
Vvi5g238 1520 Gene3D Transferase(Phosphotransferase) domain 1 135 243 - -
Vvi5g238 1520 PANTHER GH12955P 2 1520 - -
Vvi5g238 1520 SUPERFAMILY Protein kinase-like (PK-like) 137 220 IPR011009 -
Vvi5g238 1520 Pfam Beige/BEACH domain 250 460 IPR000409 -
Vvi5g238 1520 MobiDBLite consensus disorder prediction 511 534 - -
Vvi5g238 1520 Pfam Protein kinase domain 137 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g238 1520 CDD Beach 249 461 IPR000409 -
Vvi5g238 1520 ProSiteProfiles Trp-Asp (WD) repeats profile. 1392 1427 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g238 K17601 WDR81; WD repeat-containing protein 81 - vvi:100266683 2816.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g238 . . . . . Bpe14g01078 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00237 . . Bma02g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009197 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76655 PF02138 Beach 7.40E-44 No_clan Vvi PK