Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g244 ATGTCCAGAGACGCCTCCGATCTCCGGTTCGTAGCTGCAAACACTTTGAAGAACGCACAACTTGAATCAACCGAAAATGAATTTGATAATTCGATGAATTCGATTCATTTTCCTCCTCCGAGGACGCCTCTGAACACTATACCAGATCCGTCACAATTCCAGAGAGAATTTCAAGAGTTGGATTTTGACTCCAAGGATAGATTTGGAGCTGCTAGGGCAGGTCGATCGTCGGATAGGAAGATTGAAGTTTTGGAGAATTTGTTGTCGCTGAACAAGGTGATAGGAAATGTTTCCAATTGTGGAACTCCTAGGGTTTCTGGTAGAGGGAAAGCCCAGTCAGAGCCAAGTTCGGCTCAGAGCACTCCGGCGAGAAGTATTTCAAGGACTTTGAATGGCGGAGTAGTGGGAGCTTGTAGTGGTCATAGACCTCCTCCATACAGTGTTGGGAAAGGAGGGAGCTCTTCTAGGGTTTCTAGAGGGATTTCAAATCCAATGTCTGAACCGTTGGTCGAAGTTCCGCATTTTGAGATTGTGGAAGATCCCTCGTTTTGGATGGATCACAATGTGCAGGTATTGATACGGATTCGACCCATAAGTTCCGTGGAGAGGGCTTCGCAAGGGTATGGTAGATGCTTGAGGCAGGAGAGTTCACAGACCATATTGTGGCTTGGCCACCCTGAGACCAGATTTACGTTTGATCATATAGCATGCGAGAAAATATCACAGGAAAAACTATTCAGGGTTGCTGGACTGCCCATGGTGGAGAACTGCATATCTGGGTATAATAGCTGTATGTTTGCTTACGGTCAGACAGGTAGTGGGAAAACATATACTATGATGGGTGAGATATATGAGATGGACCGAGAGCTCAATGAAGATTGTGGGATAACTCCACGAATTTTTGAATATTTGTTCACAAGGATTAGAGCGGAAGAGGAGAACAGGAGGGATGAAAAACTGAAGTACAGCTGCAAATGTTCCTTTTTAGAGATATACAATGAACAGATAACAGATCTCTTGGAGCCTTCATCAACTAATCTGCAACTAAGAGAAGATATGAAGAAAGGTGTATATGTTGAAAACCTGACGGAATATCACGTGAGAACTGTTGGTGATATAGTGAAGCTTCTGTTACAGGGTGCTGCAAACAGAAAAATGGCAGCAACCTGTATGAACAGTGAAAGCAGTCGGTCCCACAGTGTTTTCACTTGCAATATTGAAAGCCATTGGGGAAAAGATTCCATGACCCACTTCAGATTTGCAAGGTTAAATTTGGTAGATCTAGCTGGTTCAGAAAGGCAGAAGAGCTCTGGCGCAGAAGGAGATCGTTTGAAAGAAGCAGCAAATATAAACAAATCCTTATCAACTCTTGGTCTGGTGATAATGTCTCTGGTGGATTTAGCACATGGGAAACATAGACATGTTCCATACAGAGATTCTAGACTCACGTTTCTACTTCAGGATTCCCTGGGTGGAAACTCAAAAACAACTATTATTGCCAATGTCAGCCCATCTACTTGCTCTGCAAGTGAAACACTAAGCACTCTAAAGTTTGCCCAGCGTGCCAAACTTATTCAGAACAATGCTAAAGTGAATGAAGATGCTTCGGGGGATGTAACGGCATTGCAAAGACAAATACAACAGTTAAAGGGCCAGTTGTCCTTTCTGATGAACCATCATAACCTTTCAAGGCCTTTGTCACGTTGTCTCACAAGTTTTGGAGAATCTAGATCTGGTGATTTTTCTGAAGGATATAATTCTTTAGAAGAGAGGATCATGATCAATAATCATAACACAAGTGCCCAAAATAATAAGAAGATGAAATGCATGGAAGCTGCTTTAGCTGGTGCCCTCAGGAGAGAGAAACTGGCAGAGGATGCAGTCCGTAGGTTAGAGGCTGAAATCGAATGCATGAATCGCTTGGCTCATCAAAGGGAAGAGGATGTTCAGCGCACTAAGATGATGCTAAGGTTCCGTGAGGAGAAGATTAAACGGCTTGAATTGCTTTCAGATGGCTCAATGTCTGCTGACAAGTATCTTATGGAGGAAAATAACGCATTGTTGGAAGAAGTTCAGCTGCTTCAATCAAGAATTGAAAGAAACCCAGAATTAACCCGATTTGCTTTGGAGAATATTAGACTTCTTGAGCAGCTCAGATTGTTTCAGAATTTCTATGAACAAGGAGAACGAGACGCATTGCTGGCTGAAGTTTCAGGATTGCGTGATCAGGTCTGTGGAGTTGTTACAATATTGAAACACTTTCATCAACCCTTGCAGGATATGGATACTGTCATGGAGTTGGAAGATTGCAAAAAGATGAATTCCAAACTCATTAGGGAAGTTGATGAATTACACGCAGAGCTGAGAAAATGTTTGACCTGTAGCCAATCTGCATCTGATTCTGTAGAAGATGAAGTACTGCAAAAGAAAAATACCCAGAAGGTGGATGATGCTTCAGTTATGCAGCATACTGACATTGAAAAAGAGCTGAGGGATGCAAGAATGTTGATTGAAGCCATGGAGTCTGAGCAGCTGCGGCTAATTGAAGAACTTCAATTTATGCAGGAGGAGAATAGAAGGTGCATGGAAATGTTAAGCAACAAGGCCAAGGTAGAGGAATCTGTTAAACTTGAAATTCCCTGTTTGGAAACAAGTGATTCAGAAATTCAGAACATGGACTTGATGAACAATTTGCAAGTCAAGTTGGACAGGATGACTAAGGACCTTGAGAATGTAAAACTAAAGAACAACCAGTATCAAGAGGATTGGGCATCACAGCTATGTCACGAGCAGCAAGTTGAATTAGTGCGTGAGCAGGTTGAGACGGAAACAACTAGAACAATTCTTCATTTACAGGAAGAGGTCGCTGCTCTTCAGTTAGAACTTCATGAGAAATTATGTAGCATGACTGAAGAAAACCTGGGACTCAGAAACAGCCTGGATGCTAAAGAAAATGAATTAAGGACATTATGTGGGGAGTGGGAAAGGGCAACCTTGGAACTAACGAACTTCCTTGTAGATGGTTCTAAATCTCTCAAAGATGCCTCTGGCCAGATAGAAAGTATTGCCTCTTCATTTCCTCGAGTTAATGTTTGGATTAGTGAACATGTTGAGAAGGCTGCCAAAGTTTGCATTGAGAAGGAAGAAACAATTTTATTACTACAAAAAAGCCTAGAAGATGCTCAAAAGATGGCAGGAGAAATGGAGCTGAAGTTGAGTTCCTTGAAGGGAGCAACAATTGCTTTAACTGAAATTCAAAGGGTACATAATGATGAAAGTGGTAAAGAGGCAATTCAGTCAAGTAAACTGTTGGATGAGAAGATCAACATGGTTAAAATCCTAGAGAGTAAACTGAAGAAAAAGGAGGTTCAGATTACTGAAGCTGAAAACCGGGCTAATGCTGCATTCCTAAATGTTATTAATGCTACTTATTCAGATACAGAACTGTATTTAACAGCCCTCCAAACCGATATTCTTGAAGCGTCTTCTTTATATAGGGAGTTGGTTCAGGACTTGATGAAAGATATTGATGAGATGAGGAAAAATTTCCTGGAATTAAAAGAGGATTGTAAAAATTTTCAGGAGGCACACACAACCATAAAAGAAGCCGATTTTATGTTGAATGCATTGCTTAAAGAAAATGAAAATGCAAAGCAGGTGACTGGTATGTGGAAGCAAGCAGGTGAGGAGTGGCTGGTGGAGAAAGCAAGCTTGATTAAGGAAGTTGAACAGCTTAAATCCTTGATACAATTGAAAGAAGGAGAGAATACAGTACTGCAGGATCACATCCACTGTAGTTTGGTAGAGATGGGGGACTCTATGTTTTTCCTTGAAGGGTTTTTTCTGCAAATGCAAAAGGATGTTGAGGAGAGGTTCAGGGAACTGTATACTGCTATCATTTCTACAGGACGGGAAATTCTATACAGCATTTGCAACTCAAGAACATCATTGGAGGATATTTACTCTGAGATCGTGGAGAAAGAATTTGCTTTATTTGTGCTTGATGAGGGTAATAGCATGATTAATGGTATTGAAGGCATAGAAGAAGGTGATCAAAGTGTAGCAGCCAGAGACTTGGAAGCAGAGTTGGGCCAAACCAGTGAGAACCTGATATATGAGAATTTGTCTCTCAAGAAAGAATTGGAAAGGAAAGAGGTTTTATTGAAGGGTTTACTTTTTGATTTTAGCTTGTTGCAGGAATCAGCCTCCAACAAGAAAGACATAAAGGATGAAACCGAAAAATTGATTCTCGCTTTAAGCCAAGTTCGATGTGAACTAGAGATGAAAACAAGTCAACTTGATGACCTATTGGTTCAGCATAGAAAGCTTGAGGGTCACCTAGCTGATACTGAAAATGCCTTGTTTATCTCAATTTCAGACCTTGAGCAAGCCCAAGAATCATTAGACAATCTCTCAGACCAAAATGCTGAGTTGAGAGTGCTATTAAAAGACCTCTACATCAAAAAATCTGAAACAGAAGATCAATTAGAAGAACAAAAGGATGTCATCAAAGGCTTAGAGAAGGAAATTCTTCGTTTGACTTCTTCAGTGGAGAAAAAATTGATGTCCTCGGTTGAGGACATTGAAGATAAATTAAGCAGGGTCACTGATGAGAGAGATGGACTCCATGAAGAAGTCTGTTCTCTGAAAGACAAGCTTGAGATGGCTTATGCATTAGCTGATGAAAATGAAGCTATTGCTGTTGAAGCACGCCAGGAATCGGAGGCAAGTAAAATATATGCAGAACAGAAGGAAGAGGAGGTTAAGATTTTAGAACATTCTGTGGAGGAGCTTGAGTGTACAATAAATGTACTGGAGAAAAAGGTATGTGAAATGGATGAAGAGGTGGAAAGACATAGATTGATAAGAAATTCCTTGGAACTGGAACTCCAAGCTTTAAGACAGAGAATGTTGACAGTTGAATCCTTCACCGAAAACACAAATGTTGAACAAACTGAAGATCAATTATCAAGGCAACTGTATAACATATCACGGGAACTTAATGAGGCTCATACCCGGATAAGAATTCTGGAAGAGGAGAGAGCAGAACGGGATAAAGAGATCAAACAATACAAAGATTACATCTCCGAACTTGTATTGCATGCTGAAGCCCAGGCATCACAGTACCAACAAAAGTACAAAACTTTGGAGGCCATGGTTCGTGAAGTGAAAACAGATTCATCAAACTCAGTATCAGCCGCACTGGTACAAGAGAAAACTGAAAAATCCACAATGAGGACAAGGGGTTCCAGCTCACCATTCAGGTGTATCGCAGGTTTGGTTCAGCAAATGAACATGGAGAAGGATCAGGAACTGTCAATGGCTAGGCTTCATATAGAAGAGCTAGAGGAATTGGCAGCAAATAGGCAGAAAGAGGTTTGCATGCTGAATACTAGACTGGCAGCAGCAGATAGCATGACACATGATGTCATTCGAGATTTACTTGGTGTGAAGCTGGACATGACTAACTATGCAGATTTGATAGACCAGCACCAAGTTCTAAAGTTATTGGAAGAGGCTCAGCAACAAACAGAAGAGTCTTTTGCAAAGGAGCAAGAAATACGGAACCTCAAGAAGCAGATTGATGATCTAATAGAGGAAAGAGAGAGTTGCATATTGGAAATAAATAGCAAGAAAGCAGATATATTTGCTGCCCAGATGACGGCTGAGCAACTTCAAGAACGAGATCACTTGCTCACTGCACAGAACGAAATGTTAAAGATGGACAAGACCAATCTAAAGAGGAAGATCATAGAACTGGACGAGATGGTGAAAAAGCTTTTTGGAACTCAAAACTCCCAACAGCAAATTCCACAATCAATGAAGATAAAGGAGAGCGGCTCGTTGAGGCTGGGTGATGCTGGTATCACCAAAAGGGTAGCAAAGTCCGAGAAACTTCTTTGTCGTGTGAATGATGAACTTGCTCAGTATCGCAGAAGAACAGATGAGCATAGCTCTTACACAAAATATAGGAAGCAGAAGGGGCCAATTTAA 5994 41.11 MSRDASDLRFVAANTLKNAQLESTENEFDNSMNSIHFPPPRTPLNTIPDPSQFQREFQELDFDSKDRFGAARAGRSSDRKIEVLENLLSLNKVIGNVSNCGTPRVSGRGKAQSEPSSAQSTPARSISRTLNGGVVGACSGHRPPPYSVGKGGSSSRVSRGISNPMSEPLVEVPHFEIVEDPSFWMDHNVQVLIRIRPISSVERASQGYGRCLRQESSQTILWLGHPETRFTFDHIACEKISQEKLFRVAGLPMVENCISGYNSCMFAYGQTGSGKTYTMMGEIYEMDRELNEDCGITPRIFEYLFTRIRAEEENRRDEKLKYSCKCSFLEIYNEQITDLLEPSSTNLQLREDMKKGVYVENLTEYHVRTVGDIVKLLLQGAANRKMAATCMNSESSRSHSVFTCNIESHWGKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDLAHGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSTCSASETLSTLKFAQRAKLIQNNAKVNEDASGDVTALQRQIQQLKGQLSFLMNHHNLSRPLSRCLTSFGESRSGDFSEGYNSLEERIMINNHNTSAQNNKKMKCMEAALAGALRREKLAEDAVRRLEAEIECMNRLAHQREEDVQRTKMMLRFREEKIKRLELLSDGSMSADKYLMEENNALLEEVQLLQSRIERNPELTRFALENIRLLEQLRLFQNFYEQGERDALLAEVSGLRDQVCGVVTILKHFHQPLQDMDTVMELEDCKKMNSKLIREVDELHAELRKCLTCSQSASDSVEDEVLQKKNTQKVDDASVMQHTDIEKELRDARMLIEAMESEQLRLIEELQFMQEENRRCMEMLSNKAKVEESVKLEIPCLETSDSEIQNMDLMNNLQVKLDRMTKDLENVKLKNNQYQEDWASQLCHEQQVELVREQVETETTRTILHLQEEVAALQLELHEKLCSMTEENLGLRNSLDAKENELRTLCGEWERATLELTNFLVDGSKSLKDASGQIESIASSFPRVNVWISEHVEKAAKVCIEKEETILLLQKSLEDAQKMAGEMELKLSSLKGATIALTEIQRVHNDESGKEAIQSSKLLDEKINMVKILESKLKKKEVQITEAENRANAAFLNVINATYSDTELYLTALQTDILEASSLYRELVQDLMKDIDEMRKNFLELKEDCKNFQEAHTTIKEADFMLNALLKENENAKQVTGMWKQAGEEWLVEKASLIKEVEQLKSLIQLKEGENTVLQDHIHCSLVEMGDSMFFLEGFFLQMQKDVEERFRELYTAIISTGREILYSICNSRTSLEDIYSEIVEKEFALFVLDEGNSMINGIEGIEEGDQSVAARDLEAELGQTSENLIYENLSLKKELERKEVLLKGLLFDFSLLQESASNKKDIKDETEKLILALSQVRCELEMKTSQLDDLLVQHRKLEGHLADTENALFISISDLEQAQESLDNLSDQNAELRVLLKDLYIKKSETEDQLEEQKDVIKGLEKEILRLTSSVEKKLMSSVEDIEDKLSRVTDERDGLHEEVCSLKDKLEMAYALADENEAIAVEARQESEASKIYAEQKEEEVKILEHSVEELECTINVLEKKVCEMDEEVERHRLIRNSLELELQALRQRMLTVESFTENTNVEQTEDQLSRQLYNISRELNEAHTRIRILEEERAERDKEIKQYKDYISELVLHAEAQASQYQQKYKTLEAMVREVKTDSSNSVSAALVQEKTEKSTMRTRGSSSPFRCIAGLVQQMNMEKDQELSMARLHIEELEELAANRQKEVCMLNTRLAAADSMTHDVIRDLLGVKLDMTNYADLIDQHQVLKLLEEAQQQTEESFAKEQEIRNLKKQIDDLIEERESCILEINSKKADIFAAQMTAEQLQERDHLLTAQNEMLKMDKTNLKRKIIELDEMVKKLFGTQNSQQQIPQSMKIKESGSLRLGDAGITKRVAKSEKLLCRVNDELAQYRRRTDEHSSYTKYRKQKGPI* 1998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2495247 2508560 + Vvi5g244 Vvi5g244 786386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g244 1997 Coils Coil 1525 1545 - -
Vvi5g244 1997 Coils Coil 1903 1923 - -
Vvi5g244 1997 Coils Coil 823 857 - -
Vvi5g244 1997 Gene3D Kinesin motor domain 184 537 IPR036961 -
Vvi5g244 1997 Coils Coil 1840 1874 - -
Vvi5g244 1997 Coils Coil 1461 1516 - -
Vvi5g244 1997 PANTHER KINESIN-LIKE PROTEIN KIN-12C ISOFORM X1 1334 1989 - -
Vvi5g244 1997 PANTHER KINESIN-LIKE PROTEIN KIN-12C ISOFORM X1 31 1105 - -
Vvi5g244 1997 Pfam Kinesin motor domain 195 525 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g244 1997 ProSitePatterns Kinesin motor domain signature. 421 432 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi5g244 1997 Coils Coil 895 922 - -
Vvi5g244 1997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 559 IPR027417 -
Vvi5g244 1997 Coils Coil 767 787 - -
Vvi5g244 1997 PRINTS Kinesin heavy chain signature 260 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g244 1997 PRINTS Kinesin heavy chain signature 389 406 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g244 1997 PRINTS Kinesin heavy chain signature 422 440 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g244 1997 PRINTS Kinesin heavy chain signature 475 496 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g244 1997 CDD KISc_KLP2_like 187 534 - -
Vvi5g244 1997 Coils Coil 1699 1726 - -
Vvi5g244 1997 ProSiteProfiles Kinesin motor domain profile. 188 525 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g244 1997 Coils Coil 1235 1255 - -
Vvi5g244 1997 Coils Coil 1581 1608 - -
Vvi5g244 1997 Coils Coil 1433 1453 - -
Vvi5g244 1997 Coils Coil 614 648 - -
Vvi5g244 1997 SMART kinesin_4 186 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g244 1997 Coils Coil 532 559 - -
Vvi5g244 1997 Coils Coil 1104 1138 - -
Vvi5g244 1997 Coils Coil 1765 1792 - -
Vvi5g244 1997 MobiDBLite consensus disorder prediction 99 159 - -
Vvi5g244 1997 Coils Coil 1169 1196 - -
Vvi5g244 1997 Coils Coil 1058 1078 - -
Vvi5g244 1997 Coils Coil 1616 1636 - -
Vvi5g244 1997 MobiDBLite consensus disorder prediction 99 128 - -
Vvi5g244 1997 PANTHER KINESIN-LIKE PROTEIN KIF11 1334 1989 - -
Vvi5g244 1997 PANTHER KINESIN-LIKE PROTEIN KIF11 31 1105 - -
Vvi5g244 1997 Coils Coil 1660 1697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g244 K10400 KIF15; kinesin family member 15 - vvi:100245872 2149.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g244 Vvi14g233 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g244 Blo01g00025 . . . . . . Bma05g00987 . . . . Car06g01297 . . Cpe08g00117 . . . . . . . . Cla06g00398 Cam06g0419 Cec06g0427 Cco06g0427 Clacu06g0406 Cmu06g0406 Cre06g1185 . Cone15ag0698 . . . . . . . Blo07g00066 Bda11g00439 . Bpe05g00795 Bpe13g00757 . Bma06g01400 . . . . . . . Cpe12g00346 . Bhi12g01988 . . . . . Lcy12g0897 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012899 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28