Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g245 ATGGCTGAGAGCAGGCGTTACGTTCCGAATCAACAGTTAGACCTTGAACAGATACTACTAGAAGCACAACACCGTTGGCTTCGACCAACTGAAATCTGTGAAATCCTCCGTAATTACCAGAAGTTTCTCATAACACCAGATCCACCTGTTACACCTCCAGCTGGTTCTCTGTTCCTGTTTGACCGAAAAGCACTTCGATATTTTCGCAAAGATGGTCATCGTTGGAGGAAGAAAAAAGATGGAAAAACTGTCAAAGAAGCTCATGAAAAGTTGAAGGCTGGAAGTGTGGATGTTCTACATTGCTATTATGCTCATGGGGAGGACAATGAGAACTTCCAGCGACGAAGTTATTGGATGCTTGACGAGCAGCTGGAGCACATTGTTCTTGTGCATTACAGAGAAATAAAAGAGGGATACAAAACCAGTACCAGTGTCCCTCGTTTGCCAAATGCAGTTCCAGCATCACAGATTGGAACCATTCAAGGTAGTTCAGCTCCTTGCTTGTCACAAGGGAATGCTCCTACTGTTACGGGTCAGATATCATATGCGTCAAGTCCAAATACTGCTGATTGGAGTGGACAAACTTTGTCCTCAGAATTTGAAGATGGGGATTCTGGGGATGATCCAGGAACCTCTTCTCTTGCTCAACCTATACTTGGTTCTGTATTTTACAATGCCTCTTTGCCTACACATGAAGCTTCAGGATTCGCTGGGCTATCAAGAAATCAACTTGGTTCAGGGCTTGCTGGAGTGCATTTTAGTCATGGTGCCAGCACATCTGTCCAGGATGAAATTCATGGTTCAAGCAGCAGTGTGCATGACCAGAAATTTGGCTTTGAACAACCTAATGGGGCCGATTTCATAACAAATAAACTAACCGATGCAAGATTGGATTCTGATAGAACGGTCCAAAATTTTGCAGCTCGTGGAGATGGGTTGAGTCCTGCTTTAGATATCAAAGGATTAACAGCAGCTTCTCAGAGAGCAGTCCAGGGTCCACTGGAGCACAACTTTCATTTAGTTCATCCCCAGTTCCAGAATTGTTCTAGTTCTCATGTAGCAGACACTTCTACTGCACACATTGAAAACAAGTCCAAAGAGGATGGTGCCAATAATGATGCATCAGGAGAGTTGAAGAAACTTGACAGCTTTGGGAGATGGATGGATAAAGAAATTGGTGGGGACTGTGATGATTCCTTGATGGCGTCTGACTCTGGAAATTATTGGAATACACTTGATACGCAGAATGACGACAAGGAGGTATCTAGTTTATCACGCCACATGCAGTTGGATATTGATTCTCTTGCTCCTTCTCTCTCCCAAGAACAACTATTTACTATCAACGATTTCTCACCAGATTGGGCTTATTCTGAAGATGAAACAAAGGTTTTAATCATAGGTACATTTTTGGGAGGCATGGAGCATTCTACCAACACTAAATGGTGCTGTATGTTTGGGGAAATTGAGGTTTCTGCTGAAGTTCTGACTAACAATGTCATCCGATGTCATGCTCCTTTGCATGCCCCTGGGCGTGTTCCATTCTATGTTACTTGTAGTAATAGGTTAGCCTGCAGTGAGGTTCGGGAGTTTGAATATCGTGAAAAACCATCAAGAGTTGCTTTTTCTATGGCTGTTAGAAGTACACCAGAAGATGATGTGCAGTTCCAAATACAACTGGCAAAAATGTTACATTTAGGCCAGGAGAGGAAGTGGTTAGATTGCTCTATTGAAGAATGTGACAAATGTAAGATAAAAAGTGACATATATTCAAAGAAAGATGACATAAAGAATGACTGGGAAGAGCTTGAAATGGCTAAAGATTTTATTGGCAATCATGTAAACCCTAGAGATGTTTTGATTAAAAATTTGTTGAAGGACAGGCTTTTTGAGTGGCTAGTTTGTAAAGTTCATGAAGGAGTTAGAGGTCCCCATGTTTTGGATGGCAAAGGCCAAGGTGTTATACATTTGGCAGCTGCTCTTGGTTATGAGTGGGCCATGGGCCCTATAATTGTTGCTGGTGTTAGTCCCAATTTCAGAGATGCAAGAGGAAGAACAGGGCTTCACTGGGCATCATACTTTGGGAGAGAGGAAACGGTCATTGCACTTGTTAAACTGGGCACATCTCCAGATGCTGTAGAGGACCCAACTCCAGCATTTCCTGGAGGACAAACAGCTGCTGATTTAGCATCCAGTAGAGGACATAAAGGAATTGCTGGATATTTGGCAGAAGCACATTTATCGAGTCACCTTTGTTCCTTAAGTCCCAGTGAGAATGTAATGGACTCTGTTTCTGCTAATATTGCAGCTGAAAAGGCTGCTCAAACTGCAGTACAGAATGTTGATGGGGTGATAGAAGAGCAGCTCTCCCTGAAAGGCTCTCTAGCTGCACTTAGAAAATCAGCTCATGCTGCTGCTCTAATTCAAGCTGCTTTGCGGGCTCGTTCATTCCGTGATAGACGATTAACAAGGAGCAATGATGATATTTCTGAAGCTTCTCTTGATCTAGTTGCTCTTGGTTCTTTAAACAAGGTTTCGAAGATGGGTCATTTCAAGGACTATTTGCATTCTGCAGCTGTAAAGATCCAACAAAAATACCGTGGCTGGAAGGGTAGAGAAGATTTTTTGAAGATACGGAGCCGTATTGTGAAAATTCAGGCCCATGTGAGGGGGCATCAAGTTCGCAAGCAATATAAAAAGGTGGTTTGGTCTGTTGGTATTGTGGAAAAAGCAATACTGCGTTGGAGGCGGAAAGGATCTGGCTTACGAGGATTTCGGTTGGAAAAGCCAATTGGAAATGCAGTGCCTGAGGTTGGGAAGACTGATGAATATGACTATCTGAGAGTTGGCCGGAGACAGAAATTTGCTGGAGTTGAAAAGGCACTCGCACGAGTTCAATCCATGGTTCGTCACCCAGAAGCTCGTGACCAATATATGAGGCTGGTTTCAAAATTCGATAATTTGCAGATAGGTGATGAAGGGAGCAGTGCATTGCAGCAAGCTGAAAAATCAGAGAAGCTAATAAAAGAGGAAGATCTGGGTTCTTTCATAGCAGATTAA 3057 43.02 MAESRRYVPNQQLDLEQILLEAQHRWLRPTEICEILRNYQKFLITPDPPVTPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDEQLEHIVLVHYREIKEGYKTSTSVPRLPNAVPASQIGTIQGSSAPCLSQGNAPTVTGQISYASSPNTADWSGQTLSSEFEDGDSGDDPGTSSLAQPILGSVFYNASLPTHEASGFAGLSRNQLGSGLAGVHFSHGASTSVQDEIHGSSSSVHDQKFGFEQPNGADFITNKLTDARLDSDRTVQNFAARGDGLSPALDIKGLTAASQRAVQGPLEHNFHLVHPQFQNCSSSHVADTSTAHIENKSKEDGANNDASGELKKLDSFGRWMDKEIGGDCDDSLMASDSGNYWNTLDTQNDDKEVSSLSRHMQLDIDSLAPSLSQEQLFTINDFSPDWAYSEDETKVLIIGTFLGGMEHSTNTKWCCMFGEIEVSAEVLTNNVIRCHAPLHAPGRVPFYVTCSNRLACSEVREFEYREKPSRVAFSMAVRSTPEDDVQFQIQLAKMLHLGQERKWLDCSIEECDKCKIKSDIYSKKDDIKNDWEELEMAKDFIGNHVNPRDVLIKNLLKDRLFEWLVCKVHEGVRGPHVLDGKGQGVIHLAAALGYEWAMGPIIVAGVSPNFRDARGRTGLHWASYFGREETVIALVKLGTSPDAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAHLSSHLCSLSPSENVMDSVSANIAAEKAAQTAVQNVDGVIEEQLSLKGSLAALRKSAHAAALIQAALRARSFRDRRLTRSNDDISEASLDLVALGSLNKVSKMGHFKDYLHSAAVKIQQKYRGWKGREDFLKIRSRIVKIQAHVRGHQVRKQYKKVVWSVGIVEKAILRWRRKGSGLRGFRLEKPIGNAVPEVGKTDEYDYLRVGRRQKFAGVEKALARVQSMVRHPEARDQYMRLVSKFDNLQIGDEGSSALQQAEKSEKLIKEEDLGSFIAD* 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2509330 2521854 - Vvi5g245 Vvi5g245 786387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g245 1018 MobiDBLite consensus disorder prediction 178 200 - -
Vvi5g245 1018 ProSiteProfiles IQ motif profile. 958 986 IPR000048 GO:0005515
Vvi5g245 1018 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vvi5g245 1018 Pfam IQ calmodulin-binding motif 855 873 IPR000048 GO:0005515
Vvi5g245 1018 Pfam IQ calmodulin-binding motif 879 898 IPR000048 GO:0005515
Vvi5g245 1018 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vvi5g245 1018 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Vvi5g245 1018 Pfam IPT/TIG domain 446 532 IPR002909 -
Vvi5g245 1018 Gene3D Immunoglobulins 440 538 IPR013783 -
Vvi5g245 1018 MobiDBLite consensus disorder prediction 259 278 - -
Vvi5g245 1018 SUPERFAMILY E set domains 446 533 IPR014756 -
Vvi5g245 1018 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 979 - -
Vvi5g245 1018 SUPERFAMILY Ankyrin repeat 642 744 IPR036770 -
Vvi5g245 1018 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vvi5g245 1018 MobiDBLite consensus disorder prediction 259 277 - -
Vvi5g245 1018 SMART iq_5 799 823 IPR000048 GO:0005515
Vvi5g245 1018 SMART iq_5 853 875 IPR000048 GO:0005515
Vvi5g245 1018 SMART iq_5 876 898 IPR000048 GO:0005515
Vvi5g245 1018 ProSiteProfiles Ankyrin repeat profile. 682 714 IPR002110 GO:0005515
Vvi5g245 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 904 IPR027417 -
Vvi5g245 1018 Gene3D - 588 747 IPR036770 -
Vvi5g245 1018 SMART ANK_2a 721 750 IPR002110 GO:0005515
Vvi5g245 1018 SMART ANK_2a 682 711 IPR002110 GO:0005515
Vvi5g245 1018 MobiDBLite consensus disorder prediction 178 212 - -
Vvi5g245 1018 Gene3D - 852 901 - -
Vvi5g245 1018 ProSiteProfiles IQ motif profile. 877 901 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g245 K21596 CAMTA; calmodulin-binding transcription activator - vvi:100240779 2005.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007961 0 8 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14831 PF03859 CG-1 3.20E-49 No_clan Vvi TF