Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g247 ATGTTCGGCTATGCCACCGATGAGACTCCGGAGCTGATGCCCCTTAGCCATGTCCTTGCAACAAAGCTAGGTGCCCGCCTCACTGAAGTCCGGTTCCAATCCGCGTACACACTGTCCTCATTTCCACCCAGCACGACGAGACTGTCACCAATGACGAGATTGCAGCTGATCTCAAAGAGCATGTCATCAAGCCTATCATCATTGACACTTACGGTGGCTGGGGTGCTCATGGTGGTGGTGCCTTCTCTGGGAAAGACCCCACTAAAGTTGATAGGAGTGGAGCTTACATTGTTAGGCAGGCTGCAAAGAGCATTGTGGCCAATGGGCTGGCTAGGAGGTGCATCGTGCAGGTGTCTTATGCTATTGGTGTGCCTGAACCCTTGTCAGTTTTCGTGGACACCTATGGTACTGGAAAGATCCCCGACAGGGAGATACTCAAGATTAGATGACCCTGATTTCACATGGGAGGTGGTAAAGCCCCTCAAGTGGGAGAAGACGCAAGCGTAA 507 52.27 MFGYATDETPELMPLSHVLATKLGARLTEVRFQSAYTLSSFPPSTTRLSPMTRLQLISKSMSSSLSSLTLTVAGVLMVVVPSLGKTPLKLIGVELTLLGRLQRALWPMGWLGGASCRCLMLLVCLNPCQFSWTPMVLERSPTGRYSRLDDPDFTWEVVKPLKWEKTQA* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2539623 2542890 + Vvi5g247 Vvi5g247 786389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g247 168 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 140 167 - -
Vvi5g247 168 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 34 IPR002133 GO:0004478|GO:0005524|GO:0006556
Vvi5g247 168 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 140 167 IPR002133 GO:0004478|GO:0005524|GO:0006556
Vvi5g247 168 Pfam S-adenosylmethionine synthetase, central domain 1 35 IPR022629 GO:0004478|GO:0006556
Vvi5g247 168 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 34 - -
Vvi5g247 168 Gene3D - 1 67 - -
Vvi5g247 168 SUPERFAMILY S-adenosylmethionine synthetase 1 36 IPR022636 GO:0004478|GO:0006556
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g247 K00789 metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6] - osa:4325163 65.4698
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .