Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g248 ATGTTCAAAACTATTTTTCAAAATTATTTTCGAAAATACTTGAAAAGAAAAAGACTAATTCACTCAAAGTATGCAATAGTTATTCAGACATGTATAAGAAAGTTTACAGGAGTTCTTCAGACAACAGAAATTGCATATTCAGTTCAAATGGAACTAACTGCTATTGGAAAAAGCATTCAGTCATCGATTCAACAACAAGCTTCACTCTTAATTAGAAGTAGTTCTACCCATACAGAATCCATAAAGGAAGACGATGAAGAACATGAGTTGCTGTGGGCTGCAATTGAGAGACTGCCTACTTTCAGACGGGTCAGGACTTCATTGTTCAGTGATGACCATGATGACGGAGATGGTACAGGAGAATTTGAAGGGAAGAGGATGGTTGATGTTACCAAGCTTGAAGATCTCGAAAGGCGGATGTTTGTTGAAAAGCTCATCAAGCACATTGAGCATGATAATCTCCGATTGCTGCAGAAACTGAGAGAGAGAATTGACAGAGTAAACGTGAAATTACCAACTGTGGAAGTGAGGTACAAGAACCTGTCTGTGGAAGCAGAGTGTGAGGTAGTTGAAGGGAAGCCCCTCCCTACACTATGGAACTCTTTCACAAGCATGTTATCTGTTTTTACCAAGTTGGTCCAGTGCAAATCTCAAGAGGCGAAGATAAGCATTCTGAAAGATGTCAGTGGCATCATCAAACCATCCAGGTTCACCCTTCTTCTTGGTCCTCCAGGCTGCGGAAAAACCACCTTCTTATTGGCCCTCGCAGGAAAACTAAACCAGTCTCTTAAGGTCACAGGGGAAATCTCCTACAATGGTTACAAGTTAAATGAGTTTGTTCCTCAGAAAACTTCAGCTTACATAAGCCAATATGACCTGCACATTCCTGAGATGACTGTAAGGGAAACTATCGATTTTTCCGCACGCTGTCAGGGTGTTGGAAGCAGAGCAGAAATTATGATGGAAGTCAGTAAAAGAGAAAAAGAAGCAGGAATTGTACCTGATCCTGATATTGACACATACATGAAGGCAATTTCAGTTGAGGGACAAAAGAGAACTCTTCAGACAGATTATGTTCTCAAGATTCTTGGGCTGGATATATGTGCTGACATAATGGTTGGAGATGCAATGAGAAGAGGCATTTCAGGTGGCCAGAAGAAAAGACTGACAACAGGGGAGATGATTGTTGGACCAACAAATACTCTATTTATGGATGAAATCTCTACTGGATTAGACAGTTCCACAACTTTTCAGATAGTTACCTGTCTCCAGCAGTTGGCTCATATCACAGAAGCAACTGTGTTGGTTACACTTCTTCAGCCAGCACCCGAAACTTTTGATCTATTTGATGATCTAATACTAATGGCAGAAGGGAAGATCGTTTACCATGGCCCTCGCAGTCATGTTCTTCAATTTTTTGAGCATTGTGGATTCAAATGCCCAGAAAGAAAGGGTGCTGCAGACTTCCTCCAGGAGGTAATCTCCAAAAAGGACCAAGAACAGTACTGGTGCCGGTCTGACCCCTATAGGTATGTTTCAGTGGATCAATTGTCTGAGATGTTTAAAGCAAGTCCTCTTGGAAGGAAGCTAGATGAGGAACTTGCAGAGCCATATGACAAATCCCAGAGCCACAAAGATGCTATATCATTTAGCAAGTACTCCTTGAGCAAATGGGAATTATTCAAAGCTTGCACAGCAAGAGAGCTGCTCCTCATGAAGAGGAACTCATTTGTATATGTGTTCAAAACAACACAGCTTGTCATCGTTGCACTCATGACAATGACGGTATTTATACGCACTCGGATGGCTGTAGACTTGCAACATTCAAATTATTTTCTGGGTTCTCTGTTTTATACACTTATCAGACTTATGACCAATGGAGTTGCAGAGCTGTTCTTGACTATTTCTACACTTCCAGTGTTCTACAAACAAAAAGAAGGGTACCTATACCCTGTATGGGCATATTCCATTCCGACATCAATCCTAAAGACCCCATATTCCCTTGTTGAATCCATTCTTTGGACATCAATTACTTACTATACCATTGGATATAGCCCTGAAGCCAAAAGGTTTTTCTGTCAGTTCCTTCTGCTATTTGCCTTACATCAAGGATCAACATCGCTATGCCGGTTCTTGGCCTCAGCTTTCCAAACTCTGATTACTGCATCAACGGTTGGTTCTCTGGTTTTGGTAGGCATGTACTTGTTTGGAGGCTTCATTGTACCACGACCCTCTTTACCACCATGGTTGAGATGGGCATTCTGGGTTTCTCCATTGACATATGGGGAGATAGGGATATCAATAAACGAATTCCTTGCCCCACGCTGGCAAAAGGTTTATGCAGGAAACACAACTATAGGGAGGAGAGTCTTGGAGAGTCATGGCTTGAACTTTCCTAGCCACTTCTACTGGATATGCTTAGCAGCGTTGTTTGGTTTCACCATACTTTTCAATATTGGGTTTGTCTTGGCCTTGACTTACTTCAAGTCCCCAGGGCCGTCTCGAGCGATTATTTCTAAAAAGAAGTTGTCTCAACTACAAGGAAGTGAAGATTATAATATCCAATTTGCAAAATGGATTGGAGATTATGAAATGATACAAAAATATGTGTTTCGTTATTCAGGGAAGATGGTGCTGCCATTTGAGCCACTGACAGTTGCATTTAAGGATGTGCAGTACTTCGTTGATACCCCTCCAGAAATGAGAGCAAAAGGGGTCACAGAGAGGAAACTTCAGCTGCTTCATGATATTACAGGATCATTTAAGCCTGGAGTCCTTACAGCTTTAATGGGAGTTAGTGGAGCTGGGAAAACAACTCTCATGGATGTTCTTTCTGGAAGGAAAACTACAGGAACTATTGAAGGAGACATAAGAATTGGAGGGTATCCCAAAGTCCAAAAGACATTTGCCAGAATATCAGGCTACTGTGAGCAGTATGATATACATTCTCCACATGTTACTGTGGAAGAATCATTAATATACTCAGCTTGGTTGCGATTACCTCCAGAGATTGATTCAGAAACAAAATATAGATTTGTTGAAGAAGTCATTGAAACAATTGAGCTCAATGATATCAAAGATTCTTTAGTTGGTATGCCTGGTCAGAGTGGTCTATCTACGGAGCAGCGAAAAAGGCTAACAATTGCAGTGGAGCTTGTTTCTAATCCATCAATAATTTTCATGGATGAACCCACATCGGGTTTAGATGCCAGAGCAGCTGCAATTGTCATGCGTGCGGTGAAGAACGTCGTTGCTACAGGAAGGACAACTGTCTGCACCATCCACCAGCCAAGCATCGACATTTTTGAAGCATTTGATGAGTTGATTCTAATGAAAAGGGGAGGACAAATCATCTATACTGGTCTGCTGGGTTATCATTCAAGTGAACTTATTGGATATTTCGAGGGTATTTCTGGATTGCCAAAGATTAAAGACAACTACAATCCAGCAACATGGATGTTGGAAGTTACTTCAGCATCAGTGGAAGCAGAACTCGGCTTAGATTTTTCCAAAATCTATAAGGAATCATCCCTTTACCAGGTCACAATAGAGCTGGTAAATCAGTTAAGCAAACCCCCACCAGATTCAAGAGACTTGAATTTTCCTAATCGTTTTCCACAAAATGGTTGGGAACAGTTCATGGCATGCCTATGGAAACTACATTTGTCCTACTGGAGGAGTCCTGAATACAACTTCGTTCGTTTCCTGTTTATGATTCTTGCTGCATTTCTTTTCGGCGCCACCTTTTGGCAGAAAGGACAGAAAATAGACAATGCGCAGGATTTGTTCAACATACTTGGATCAATGTATCTTGCTGTCATATTCTTGGGCATAAACAACTGTTCAACAGTTCTTCCCCATGTTGCCACTGAGCGCACCGTTGTGTATCGGGAGAAATTCGCCGGAATGTACTCTTCAAGGGCTTATTCATTTGCACAGGTGGCCATAGAAGTGCCTTATATTTTACTGCAAGCCATTTTGTATGTGGCCATTACATATCCTATGATAGGATACTACTGGTCACCTTACAAGGTCTTTTGGTACTTCTACGCAACATTCTGTACATTTCTGTACTTCGTATACCTTGGGATGCTGATAGTTTCACTGAGCCCAAATTCTCAAGTGGCTTCCATATTAGCAACGGCAGCATACACGATACTGAATCTTTTCTCAGGCTTCCTTATGCCAGGACCGAAAATTCCAAAGTGGTGGATTTGGTGCTACTGGATTTGTCCTACATCCTGGTCCCTCAATGGCCTCTTGACTTCACAATATGGAGACATGAAGAAAGAGATACTGATATTTGGGGAGCTTAAACCAGTTAGTTCCTTCCTGAAAGATTATTTTGGTTTTCAACATGACCATTTAGGCCTTGTGGCTGTTGCTCTTCTTGTTTTCCCAGTTGTTTTTGCATCTCTTTTTGCATATTTCATCGACAAATTAAATTTTCAAAGGAGGTGA 4461 41.34 MFKTIFQNYFRKYLKRKRLIHSKYAIVIQTCIRKFTGVLQTTEIAYSVQMELTAIGKSIQSSIQQQASLLIRSSSTHTESIKEDDEEHELLWAAIERLPTFRRVRTSLFSDDHDDGDGTGEFEGKRMVDVTKLEDLERRMFVEKLIKHIEHDNLRLLQKLRERIDRVNVKLPTVEVRYKNLSVEAECEVVEGKPLPTLWNSFTSMLSVFTKLVQCKSQEAKISILKDVSGIIKPSRFTLLLGPPGCGKTTFLLALAGKLNQSLKVTGEISYNGYKLNEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAEIMMEVSKREKEAGIVPDPDIDTYMKAISVEGQKRTLQTDYVLKILGLDICADIMVGDAMRRGISGGQKKRLTTGEMIVGPTNTLFMDEISTGLDSSTTFQIVTCLQQLAHITEATVLVTLLQPAPETFDLFDDLILMAEGKIVYHGPRSHVLQFFEHCGFKCPERKGAADFLQEVISKKDQEQYWCRSDPYRYVSVDQLSEMFKASPLGRKLDEELAEPYDKSQSHKDAISFSKYSLSKWELFKACTARELLLMKRNSFVYVFKTTQLVIVALMTMTVFIRTRMAVDLQHSNYFLGSLFYTLIRLMTNGVAELFLTISTLPVFYKQKEGYLYPVWAYSIPTSILKTPYSLVESILWTSITYYTIGYSPEAKRFFCQFLLLFALHQGSTSLCRFLASAFQTLITASTVGSLVLVGMYLFGGFIVPRPSLPPWLRWAFWVSPLTYGEIGISINEFLAPRWQKVYAGNTTIGRRVLESHGLNFPSHFYWICLAALFGFTILFNIGFVLALTYFKSPGPSRAIISKKKLSQLQGSEDYNIQFAKWIGDYEMIQKYVFRYSGKMVLPFEPLTVAFKDVQYFVDTPPEMRAKGVTERKLQLLHDITGSFKPGVLTALMGVSGAGKTTLMDVLSGRKTTGTIEGDIRIGGYPKVQKTFARISGYCEQYDIHSPHVTVEESLIYSAWLRLPPEIDSETKYRFVEEVIETIELNDIKDSLVGMPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVATGRTTVCTIHQPSIDIFEAFDELILMKRGGQIIYTGLLGYHSSELIGYFEGISGLPKIKDNYNPATWMLEVTSASVEAELGLDFSKIYKESSLYQVTIELVNQLSKPPPDSRDLNFPNRFPQNGWEQFMACLWKLHLSYWRSPEYNFVRFLFMILAAFLFGATFWQKGQKIDNAQDLFNILGSMYLAVIFLGINNCSTVLPHVATERTVVYREKFAGMYSSRAYSFAQVAIEVPYILLQAILYVAITYPMIGYYWSPYKVFWYFYATFCTFLYFVYLGMLIVSLSPNSQVASILATAAYTILNLFSGFLMPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMKKEILIFGELKPVSSFLKDYFGFQHDHLGLVAVALLVFPVVFASLFAYFIDKLNFQRR* 1487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2543550 2558096 + Vvi5g248 Vvi5g248 786390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g248 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 482 IPR027417 -
Vvi5g248 1486 Gene3D - 901 1128 IPR027417 -
Vvi5g248 1486 Pfam ABC-2 type transporter 440 494 IPR043926 GO:0140359
Vvi5g248 1486 PANTHER ATP-BINDING CASSETTE TRANSPORTER 62 1486 - -
Vvi5g248 1486 Pfam ABC transporter 914 1066 IPR003439 GO:0005524
Vvi5g248 1486 Pfam ABC transporter 225 407 IPR003439 GO:0005524
Vvi5g248 1486 Gene3D - 212 511 IPR027417 -
Vvi5g248 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 886 1138 IPR003439 GO:0005524
Vvi5g248 1486 Pfam ABC-transporter N-terminal 138 200 IPR029481 -
Vvi5g248 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 1120 IPR027417 -
Vvi5g248 1486 Pfam Plant PDR ABC transporter associated 776 838 IPR013581 -
Vvi5g248 1486 SMART AAA_5 234 468 IPR003593 -
Vvi5g248 1486 SMART AAA_5 923 1115 IPR003593 -
Vvi5g248 1486 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 62 1486 - -
Vvi5g248 1486 CDD ABCG_PDR_domain1 221 464 IPR034001 -
Vvi5g248 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 203 482 IPR003439 GO:0005524
Vvi5g248 1486 Pfam ABC-2 type transporter 560 771 IPR013525 GO:0016020|GO:0140359
Vvi5g248 1486 Pfam ABC-2 type transporter 1211 1424 IPR013525 GO:0016020|GO:0140359
Vvi5g248 1486 CDD ABCG_PDR_domain2 883 1121 IPR034003 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g248 K08711 PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR - vvi:100263041 2843.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g248 Vvi14g40 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001197 0 3 1 1 0 4 1 4 4 1 4 4 1 2 3 1 4 1 1 4 3 2 1 4 3 4 5 7 1 2 76