Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g249 ATGGCTTCGATTTCTCTATCCTTCTCATCCTCCCTGCTTCCCTCTCCTCTTCTCCAAGACAAGAACAAGGCCACCTCTGCAACCAAACCCAGAGACCACCATGGATCACTTTGCGGAGTTGTTCGCTGCGCATTCGCTTCACCAGCGAGAAGGAAGACCTCTTCTACTCCTTCTTCTTCTTCTTCTTCTTCAGCTGTGGGTAAGAAGAGACTGTGGAAGCAAGGAGAATTTCCAGGAACTTCGGCGGAAGGAAGATCCAGAAAGACGCCCATTAAGAATATCAAGAAGAAGTTGGACCGCAAGAACGACGCCAAGGCCTGGGCCAACACCGTTGCCGAAGCCTTGTCCGATCTAGTCCTCAAAAAGCAATGGCTCCAAGCTCTTGAGGTCTTTGAGATGCTCAGAGAACAGCCTTTTTATCAACCAAAAGAAGGGACTTACATGAAGCTCCTTGTTCTGCTTGGAAAATCTGGGCAACCCCTTCGTGCTCATGAACTTTTTGACACAATGGTTGAAGAAGGATGTGAACCCACCACTGAACTTTATACAGCTCTGCTTGCATCTTATTGTCGGAGCAATCTCATTGATGAAGCATTCTCAATCCTCAACCAAATGAAGACCCTCCCTCGTTGCCAGCCTGATGTTTTTACATACAGTACCCTGCTCAAGGCTTGTGTTGACGCTTCTCGATTTGAACTGGTTGAGTCCCTTTATGAAGAAATGGATGTACGATCAATAACTCCAAATACAGTTACACAAAATATAGTGTTAAGTGGCTATGGGAAGGCAGGCAAATTTGACGAAATGGAGAAAGTGCTGTCAGGAATGCTTGAGAGCACCTCAAGCAAGCCTGATGTCTGGACCATGAACACCATTCTTAGCTTGTTTGGTAACAAGGGACAGATTGAAATTATGGAAAAATGGTATGAGAAATTCCGGAATTTTGGAATTGAACCAGAAACACGCACCTTTAATATATTGATTGGCGCTTATGGGAAGAAACGGATGTATGATAAGATGTCATCAGTGATGGAGTACATGCGCAAGCTTCAGTTTCCTTGGACGACCTCAACTTACAATAATGTGATCGAGGCATTTTCTGATGTGGGGGATGCAAAAAACATGGAGTACACATTTGATCAGATGCGTGCTGAGGGCATGAAAGCCGATACCAAGACATTTTGCTGCCTTATTAGAGGATATGCTAATGCAGGCCTTTTCCATAAAGCTGAGGATTTGATAGAAATGGAGAGAGTTTTCAATCGGATGAAAGATAAGCACTGTCAACCAGACTCCACAACCTATTCTATCATGGTAGAGGCATATAAAAAGGAAGGCATGAATGACAAAATCTATGATTTGGAGCAGGAGAGACAGAGGATGGTTGCTGATGGTCCAAAAGGTGATTAG 1410 44.33 MASISLSFSSSLLPSPLLQDKNKATSATKPRDHHGSLCGVVRCAFASPARRKTSSTPSSSSSSSAVGKKRLWKQGEFPGTSAEGRSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMVADGPKGD* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2561354 2563987 - Vvi5g249 Vvi5g249 786391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g249 469 PANTHER OS03G0309800 PROTEIN 1 409 - -
Vvi5g249 469 PANTHER OS03G0309800 PROTEIN 409 463 - -
Vvi5g249 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vvi5g249 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vvi5g249 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vvi5g249 469 MobiDBLite consensus disorder prediction 49 68 - -
Vvi5g249 469 Pfam PPR repeat 146 175 IPR002885 -
Vvi5g249 469 Pfam PPR repeat 254 279 IPR002885 -
Vvi5g249 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Vvi5g249 469 Gene3D Tetratricopeptide repeat domain 230 351 IPR011990 GO:0005515
Vvi5g249 469 PANTHER ATPASE EXPRESSION PROTEIN 3 1 409 - -
Vvi5g249 469 PANTHER ATPASE EXPRESSION PROTEIN 3 409 463 - -
Vvi5g249 469 Pfam PPR repeat family 177 226 IPR002885 -
Vvi5g249 469 Pfam PPR repeat family 408 442 IPR002885 -
Vvi5g249 469 Pfam PPR repeat family 356 403 IPR002885 -
Vvi5g249 469 Pfam PPR repeat family 284 331 IPR002885 -
Vvi5g249 469 TIGRFAM PPR: pentatricopeptide repeat domain 251 285 IPR002885 -
Vvi5g249 469 TIGRFAM PPR: pentatricopeptide repeat domain 181 215 IPR002885 -
Vvi5g249 469 TIGRFAM PPR: pentatricopeptide repeat domain 393 415 IPR002885 -
Vvi5g249 469 TIGRFAM PPR: pentatricopeptide repeat domain 358 390 IPR002885 -
Vvi5g249 469 TIGRFAM PPR: pentatricopeptide repeat domain 216 250 IPR002885 -
Vvi5g249 469 TIGRFAM PPR: pentatricopeptide repeat domain 323 351 IPR002885 -
Vvi5g249 469 TIGRFAM PPR: pentatricopeptide repeat domain 146 178 IPR002885 -
Vvi5g249 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 208 IPR002885 -
Vvi5g249 469 Gene3D Tetratricopeptide repeat domain 83 225 IPR011990 GO:0005515
Vvi5g249 469 Gene3D Tetratricopeptide repeat domain 352 464 IPR011990 GO:0005515
Vvi5g249 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vvi5g249 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g249 - - - vvi:100257907 885.56
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35