Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g25 ATGGCGTGTTTGGCACAGCAATTCACAGGGCTGAGGTGCCCACCTATCTCTTCTTCACGCCTTTCCAAACCCTTCTCTCCAAAACAACCCCAGAAGCCCAGCTTTGTTCGCATAGTCTCCGCTGTGGCAATCTCAAATGCCCAGACCAAAGAGAGGCTCAAGCTCAAAGAAATGTTTGAAGACGCCTACGAGCGATGCCGTACTGCTCCAACTGAAGGTGTCTCCTTCTCTGCCGACGATTTCTACTCCGCTCTCGACAAGTACGACTTCAATTCCGAAATTGGCACCAAGGTTAAGGGAACGGTGTTTTGCACCGACACCAATGGGGCACTTGTAGACATTACTGCAAAATCTTCAGCATATTTGCCGGTTTATGAGGCATGCATTCACAAAATAAAACACGTAGAAGAAGCTGGGATTGTTCCTGGTGTGAGGGAGGAGTTTGTGATTATTGGTGAAAATGAAGCTGATGATAGCTTGATCTTGAGCTTAAGGTCAATCCAGTATGATCTTGCATGGGAACGATGTAGACAGCTTCAGGCTGAGGATGTTGTTGTGAAGGGTAAGGTTGTAGGTGCAAATAAAGGTGGAGTGGTGGCATTGGTGGAGGGTCTTCGTGGGTTTGTTCCTTTCTCACAGATATCATCAAAAACAACTGCTGAAGAGCTTCTTGATAAAGAACTTCCCGTGAAGTTTGTGGAGGTTGATGAGGAACAGTCTAGGCTTGTTCTCAGCAACCGCAAGGCCATGGCAGACAGCCAGGCACAGCTAGGAATCGGATCAGTGGTTACTGGAACTGTTCAGAGTCTGAAACCATACGGTGCCTTCATCGACATTGGTGGAATTAATGGCCTTCTTCATGTCAGTCAGATCAGTCATGATCGTGTCTCAGATATTGCCACAGTTCTTCAACCTGGTGACATCCTCAAGGTTATGATCCTGAGCCACGACCGTGAGAGAGGCCGTGTAAGTCTCTCAACTAAGAAGTTAGAACCTACCCCTGGAGACATGATTCGCAATCCAAAGCTTGTTTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGGCAGAGAATAGCTCAAGCAGAAGCTATGGCTCGGGCAGACATGCTAAGATTCCAACCTGAGAGTGGATTAACTCTCAATTCGGATGGAATCTTGGGCCCCGTTTCCGCCGACTTGCCAGCAGAGGGTCTAGATCTAAGTGATGTTCCTCCTGCTGAAGACTCTTGA 1233 47.93 MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSFVRIVSAVAISNAQTKERLKLKEMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGLDLSDVPPAEDS* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 258167 261964 + Vvi5g25 Vvi5g25 786167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g25 410 PANTHER 30S RIBOSOMAL PROTEIN S1 1 410 - -
Vvi5g25 410 SMART S1_6 93 165 IPR022967 -
Vvi5g25 410 SMART S1_6 258 328 IPR022967 -
Vvi5g25 410 SMART S1_6 181 247 IPR022967 -
Vvi5g25 410 Gene3D - 79 175 IPR012340 -
Vvi5g25 410 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Vvi5g25 410 SUPERFAMILY Nucleic acid-binding proteins 178 251 IPR012340 -
Vvi5g25 410 Gene3D - 254 332 IPR012340 -
Vvi5g25 410 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Vvi5g25 410 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 410 - -
Vvi5g25 410 CDD S1_RPS1_repeat_ec2_hs2 194 247 - -
Vvi5g25 410 CDD S1_RPS1_repeat_hs4 260 328 - -
Vvi5g25 410 Pfam S1 RNA binding domain 181 245 IPR003029 GO:0003676
Vvi5g25 410 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Vvi5g25 410 Coils Coil 345 365 - -
Vvi5g25 410 Gene3D - 176 253 IPR012340 -
Vvi5g25 410 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Vvi5g25 410 SUPERFAMILY Nucleic acid-binding proteins 90 191 IPR012340 -
Vvi5g25 410 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g25 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - vvi:100265325 772.696
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002885 2 7 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 1 2 2 1 5 2 1 54