Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g250 ATGGAGCACAAATTCGGAGGTAAAGCCAACCATTTGCGTGGTCCAACGGTGTCTGATTTGAAGAAACTTGGGAAAAGGACTCTGGAATGGGATTTGAATGGCTGGAAATGGGATGGGGATCTTTTCAGGGCTACTCAGCTGAACTCTGTGCCATCAGATTGTGGGAGTAAGCAATTCTTTCCACCTGCATCTGAACCAGTTACTAGGGAACTGGAGAAAAAGCGGAGAGTTGTGGTTCTTGAAGACGAAGCGTGCGATGAGCTCGGCTCCCTTAATTTGAAGCTTGGTGCTCAAGTTTACCCTATCATGGAAGGGGAGGTAAAGAGTGGGAAGAAGACTAAGCTCATTGGGGCTACCCCAAATCGTGCAGTCTGCCAAGTGGAGGATTGCAGAGCTGATTTGGGCAATGCCAAGGATTACCATAGACGACATAAAGTTTGTGACATGCATTCAAAGGCTAGTAAAGCTCTGGTCGGAAATGTTATGCAGCGGTTCTGTCAGCAGTGTAGCAGGTTTCACCTTCTTCAAGAGTTTGATGAAGGAAAAAGAAGTTGTCGAAGGCGTTTGGCAGGTCATAACAGACGGAGGAGGAAAACGCATCCTGATACCGTAGTTAATGGAGGTTCCCTGAATGATGAACGAGGAATTCGTTATCTACTGATGAGCGTGCTGAGAATACTCTCCAATATGCATGCAAATAGCTCAGATCAAACAAAGGATCAGGATCTCCTATCTCATATATTAAAGAACCTTGCCAGTTCTGGTGGTACAATAAATGAAAGGGACATTCCAGGGTTATTGCAGGGATCTCAAGATTTACTGAATGCTGGAACCTCTGTTGGAACTGCAGAAAAGGCCTCTTCTAGGCCTATTGGGCCATGCTTGATGGCAACTGTACCTGAAATGGCAGAGAAAAGAGTATTTACTGATGATGCTCAGGTTGGAATGCTACAAAACTTGTCTGGTACCCAACCCACAAATAGATTTCCAACAGGAGATGGTGTTCCAGCCATGGAAAATATGCAAGGAACCACACATGGGAGGATCAAGTTAAATAACTTCGACTTAAATAATGTCTATAATGATTCTCAAGATTGCATAGAAAACCCAGAGAGGTCTTATGGTCCTGCAAATCCAGGGACCAGGCCTCTTGATCGTGCTCTTTTGGTACAACAAGACTCTTACAAGTCAAGCCCACCTCAGACAAGTGCAAATTCAGATTCAACTTCTGCCCGGTCTCTGTCTACTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTCTTTAAACTCTTTGGAAAAGATCCCAGTGATTTTCCTCTTGTTATGAGAAAGCAGGTCCTCGACTGGTTATCCCACACTCCTACGGAAATTGAGAGCTTCATCAGACCTGGCTGTATCATATTGACAATATACCTTCGCCTTGGAAAATCCACATGGGAGGAGCTCTGCTGTGATCTAGGCTCCAGTTTGAGTAGGCTTTTGGATATGTCTGAGGACTCTTTTTGGAGAACTGGTTGGGTATATACTAGAGTACAGAATCGTTTAGCATTTATCTATAGTGGTCAGGTTGTTCTAGACACCCCCTTACCATTTAAAAGCCATAATTGCAGGATCTCAAGCATCAAACCAATTGCAGTTCCTGTCTCTGAACAAGCTCAATTTGTGGTTAAGGGCTTTAACCTTGCTGGATCTGCCACAAGGTTACTCTGTGCACTTGAGGGAAGGTATTTGGTCCAAGAAACTTGTTATGAGTTGACAGAGGGTACAGATACATTCATTGAGCATGATGATCTCCAGTGCCTCAGCTTTCCTTGCTCTGTACCAAATATTAGTGGGAGAGGATTCATTGAGGTGGAAGATCATGGTCTCAACAGCAGCTTCTTTCCATTTATAGTTGCAGAGCAGGATGTATGTTCTGAGATTTGTATGCTGGAGGGTGTGATAGATATGGTTGAGACTGCTGAAGACATCCTCCGAGAAACAGGAAAAATGCAAGCCAAGTATCAAGCCCTGGACTTTATACATGAAATGGGTTGGCTGCTTCATAGAAACTATTTGAAGTTTAGATTGGGTGACATGGATCCCAATCTGGACCTCTTTCCTTTCAAAAGGTTTAAGTGCCTCATGGAGTTTTCAGTGGACCATGATTGGTGTGCTGTTGTGAAGAAACTCTTGGGTATTGTGTTCAGTGGGACAGTAAATGCCGGGGAGCATCCTTCCATTGAAATTGCATTGTTGGACATGTGCCTCCTTCATAGCGCTGTTCGGAGAAACTGCAGACCTATGGTGGAACTCCTCTTGAGATTCATCCCAGATAAAATCTTGGATAAATCAGGTTCCAATGACAAGCGATGGCCCAACAGTGGCTCCAACTACTTGTTTAAGCCAGATTTCGTTGGTCCAGCAGGTTTGACTCCCCTTCACATAGCAGCCAGTATGGATGGCTCCGAGAATGTGTTGGATGCATTAACCGATGATCCTGAATTGGTGGGAATTGAAGCTTGGAAGAGTGCTAGAGACAAAGTTGGTTCGACTCCCAATGACTACGCATGCTTGCGAGGTCACAACTCCTACATCCAATTAGTCCAGAAGAAAATCAACAATAAGTTAAACAGACGTGTGGTGCTTGATATCCCTGATGCCCCCTTAGACTGCAACACCAAGCCGAAGCCGTCTGATGGGCTCAAATCGGTGAGGGTTCCCAGTTTGCAGATTGAGAAACAAGCAGCACGCCAACATTGCAAGCTATGCGAACAGAAGCTGGCTTATGGCGACACGAGAATGAGAACATCATTGGCATACAGGCCAGCAATGCTCTCAATGGTGGCTATAGCTGCTGTCTGCGTATGTGTGGCTCTGCTCTTCAAAAGCTCGCCAGAAGTGCTTTACGTGTTCAGGCCCTTCAGATGGGAACTACTGAAGTATGGATCCAGCTAA 2943 45.12 MEHKFGGKANHLRGPTVSDLKKLGKRTLEWDLNGWKWDGDLFRATQLNSVPSDCGSKQFFPPASEPVTRELEKKRRVVVLEDEACDELGSLNLKLGAQVYPIMEGEVKSGKKTKLIGATPNRAVCQVEDCRADLGNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLNDERGIRYLLMSVLRILSNMHANSSDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQDLLNAGTSVGTAEKASSRPIGPCLMATVPEMAEKRVFTDDAQVGMLQNLSGTQPTNRFPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQDCIENPERSYGPANPGTRPLDRALLVQQDSYKSSPPQTSANSDSTSARSLSTSSGEAQSRTDRIVFKLFGKDPSDFPLVMRKQVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEELCCDLGSSLSRLLDMSEDSFWRTGWVYTRVQNRLAFIYSGQVVLDTPLPFKSHNCRISSIKPIAVPVSEQAQFVVKGFNLAGSATRLLCALEGRYLVQETCYELTEGTDTFIEHDDLQCLSFPCSVPNISGRGFIEVEDHGLNSSFFPFIVAEQDVCSEICMLEGVIDMVETAEDILRETGKMQAKYQALDFIHEMGWLLHRNYLKFRLGDMDPNLDLFPFKRFKCLMEFSVDHDWCAVVKKLLGIVFSGTVNAGEHPSIEIALLDMCLLHSAVRRNCRPMVELLLRFIPDKILDKSGSNDKRWPNSGSNYLFKPDFVGPAGLTPLHIAASMDGSENVLDALTDDPELVGIEAWKSARDKVGSTPNDYACLRGHNSYIQLVQKKINNKLNRRVVLDIPDAPLDCNTKPKPSDGLKSVRVPSLQIEKQAARQHCKLCEQKLAYGDTRMRTSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLKYGSS* 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2565342 2574143 - Vvi5g250 Vvi5g250 786392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g250 980 MobiDBLite consensus disorder prediction 394 420 - -
Vvi5g250 980 SUPERFAMILY SBT domain 123 205 IPR036893 GO:0003677|GO:0005634
Vvi5g250 980 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 979 - -
Vvi5g250 980 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 979 IPR044817 GO:0003677
Vvi5g250 980 SUPERFAMILY Ankyrin repeat 749 864 IPR036770 -
Vvi5g250 980 Gene3D - 118 186 IPR036893 GO:0003677|GO:0005634
Vvi5g250 980 Pfam SBP domain 125 198 IPR004333 GO:0003677
Vvi5g250 980 ProSiteProfiles Zinc finger SBP-type profile. 122 199 IPR004333 GO:0003677
Vvi5g250 980 Gene3D - 692 878 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g250 - - - vvi:100252756 1941.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g464 ECH 155 861 SBP-box Gene Family AT2G47070 58.9 2.3e-242 835.5
Vvi5g250 . 149 981 SBP-box Gene Family AT2G47070 52.6 3.0e-221 765.4
Vvi11g804 . 4 158 SBP-box Gene Family AT1G27370 52.2 8.0e-40 161.8
Vvi7g464 ECH 1 861 SBP-box Gene Family AT3G60030 55.1 6.8e-268 920.6
Vvi18g24 . 1 920 SBP-box Gene Family AT1G20980 52.6 6.2e-278 954.1
Vvi11g804 . 1 158 SBP-box Gene Family AT5G43270 61.6 4.5e-49 192.6
Vvi5g384 . 8 685 SBP-box Gene Family AT5G18830 52.6 3.1e-195 679.1
Vvi7g464 ECH 155 861 SBP-box Gene Family AT2G47070 58.9 2.3e-242 835.5
Vvi5g250 . 149 981 SBP-box Gene Family AT2G47070 52.6 3.0e-221 765.4
Vvi11g804 . 1 158 SBP-box Gene Family AT5G43270 61.6 4.5e-49 192.6
Vvi5g384 . 8 685 SBP-box Gene Family AT5G18830 52.6 3.1e-195 679.1
Vvi11g804 . 4 158 SBP-box Gene Family AT1G27370 52.2 8.0e-40 161.8
Vvi7g464 ECH 1 861 SBP-box Gene Family AT3G60030 55.1 6.8e-268 920.6
Vvi18g24 . 1 920 SBP-box Gene Family AT1G20980 52.6 6.2e-278 954.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14832 PF03110 SBP 2.30E-28 No_clan Vvi TF