Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g250 ATGGAGCACAAATTCGGAGGTAAAGCCAACCATTTGCGTGGTCCAACGGTGTCTGATTTGAAGAAACTTGGGAAAAGGACTCTGGAATGGGATTTGAATGGCTGGAAATGGGATGGGGATCTTTTCAGGGCTACTCAGCTGAACTCTGTGCCATCAGATTGTGGGAGTAAGCAATTCTTTCCACCTGCATCTGAACCAGTTACTAGGGAACTGGAGAAAAAGCGGAGAGTTGTGGTTCTTGAAGACGAAGCGTGCGATGAGCTCGGCTCCCTTAATTTGAAGCTTGGTGCTCAAGTTTACCCTATCATGGAAGGGGAGGTAAAGAGTGGGAAGAAGACTAAGCTCATTGGGGCTACCCCAAATCGTGCAGTCTGCCAAGTGGAGGATTGCAGAGCTGATTTGGGCAATGCCAAGGATTACCATAGACGACATAAAGTTTGTGACATGCATTCAAAGGCTAGTAAAGCTCTGGTCGGAAATGTTATGCAGCGGTTCTGTCAGCAGTGTAGCAGGTTTCACCTTCTTCAAGAGTTTGATGAAGGAAAAAGAAGTTGTCGAAGGCGTTTGGCAGGTCATAACAGACGGAGGAGGAAAACGCATCCTGATACCGTAGTTAATGGAGGTTCCCTGAATGATGAACGAGGAATTCGTTATCTACTGATGAGCGTGCTGAGAATACTCTCCAATATGCATGCAAATAGCTCAGATCAAACAAAGGATCAGGATCTCCTATCTCATATATTAAAGAACCTTGCCAGTTCTGGTGGTACAATAAATGAAAGGGACATTCCAGGGTTATTGCAGGGATCTCAAGATTTACTGAATGCTGGAACCTCTGTTGGAACTGCAGAAAAGGCCTCTTCTAGGCCTATTGGGCCATGCTTGATGGCAACTGTACCTGAAATGGCAGAGAAAAGAGTATTTACTGATGATGCTCAGGTTGGAATGCTACAAAACTTGTCTGGTACCCAACCCACAAATAGATTTCCAACAGGAGATGGTGTTCCAGCCATGGAAAATATGCAAGGAACCACACATGGGAGGATCAAGTTAAATAACTTCGACTTAAATAATGTCTATAATGATTCTCAAGATTGCATAGAAAACCCAGAGAGGTCTTATGGTCCTGCAAATCCAGGGACCAGGCCTCTTGATCGTGCTCTTTTGGTACAACAAGACTCTTACAAGTCAAGCCCACCTCAGACAAGTGCAAATTCAGATTCAACTTCTGCCCGGTCTCTGTCTACTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTCTTTAAACTCTTTGGAAAAGATCCCAGTGATTTTCCTCTTGTTATGAGAAAGCAGGTCCTCGACTGGTTATCCCACACTCCTACGGAAATTGAGAGCTTCATCAGACCTGGCTGTATCATATTGACAATATACCTTCGCCTTGGAAAATCCACATGGGAGGAGCTCTGCTGTGATCTAGGCTCCAGTTTGAGTAGGCTTTTGGATATGTCTGAGGACTCTTTTTGGAGAACTGGTTGGGTATATACTAGAGTACAGAATCGTTTAGCATTTATCTATAGTGGTCAGGTTGTTCTAGACACCCCCTTACCATTTAAAAGCCATAATTGCAGGATCTCAAGCATCAAACCAATTGCAGTTCCTGTCTCTGAACAAGCTCAATTTGTGGTTAAGGGCTTTAACCTTGCTGGATCTGCCACAAGGTTACTCTGTGCACTTGAGGGAAGGTATTTGGTCCAAGAAACTTGTTATGAGTTGACAGAGGGTACAGATACATTCATTGAGCATGATGATCTCCAGTGCCTCAGCTTTCCTTGCTCTGTACCAAATATTAGTGGGAGAGGATTCATTGAGGTGGAAGATCATGGTCTCAACAGCAGCTTCTTTCCATTTATAGTTGCAGAGCAGGATGTATGTTCTGAGATTTGTATGCTGGAGGGTGTGATAGATATGGTTGAGACTGCTGAAGACATCCTCCGAGAAACAGGAAAAATGCAAGCCAAGTATCAAGCCCTGGACTTTATACATGAAATGGGTTGGCTGCTTCATAGAAACTATTTGAAGTTTAGATTGGGTGACATGGATCCCAATCTGGACCTCTTTCCTTTCAAAAGGTTTAAGTGCCTCATGGAGTTTTCAGTGGACCATGATTGGTGTGCTGTTGTGAAGAAACTCTTGGGTATTGTGTTCAGTGGGACAGTAAATGCCGGGGAGCATCCTTCCATTGAAATTGCATTGTTGGACATGTGCCTCCTTCATAGCGCTGTTCGGAGAAACTGCAGACCTATGGTGGAACTCCTCTTGAGATTCATCCCAGATAAAATCTTGGATAAATCAGGTTCCAATGACAAGCGATGGCCCAACAGTGGCTCCAACTACTTGTTTAAGCCAGATTTCGTTGGTCCAGCAGGTTTGACTCCCCTTCACATAGCAGCCAGTATGGATGGCTCCGAGAATGTGTTGGATGCATTAACCGATGATCCTGAATTGGTGGGAATTGAAGCTTGGAAGAGTGCTAGAGACAAAGTTGGTTCGACTCCCAATGACTACGCATGCTTGCGAGGTCACAACTCCTACATCCAATTAGTCCAGAAGAAAATCAACAATAAGTTAAACAGACGTGTGGTGCTTGATATCCCTGATGCCCCCTTAGACTGCAACACCAAGCCGAAGCCGTCTGATGGGCTCAAATCGGTGAGGGTTCCCAGTTTGCAGATTGAGAAACAAGCAGCACGCCAACATTGCAAGCTATGCGAACAGAAGCTGGCTTATGGCGACACGAGAATGAGAACATCATTGGCATACAGGCCAGCAATGCTCTCAATGGTGGCTATAGCTGCTGTCTGCGTATGTGTGGCTCTGCTCTTCAAAAGCTCGCCAGAAGTGCTTTACGTGTTCAGGCCCTTCAGATGGGAACTACTGAAGTATGGATCCAGCTAA 2943 45.12 MEHKFGGKANHLRGPTVSDLKKLGKRTLEWDLNGWKWDGDLFRATQLNSVPSDCGSKQFFPPASEPVTRELEKKRRVVVLEDEACDELGSLNLKLGAQVYPIMEGEVKSGKKTKLIGATPNRAVCQVEDCRADLGNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLNDERGIRYLLMSVLRILSNMHANSSDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQDLLNAGTSVGTAEKASSRPIGPCLMATVPEMAEKRVFTDDAQVGMLQNLSGTQPTNRFPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQDCIENPERSYGPANPGTRPLDRALLVQQDSYKSSPPQTSANSDSTSARSLSTSSGEAQSRTDRIVFKLFGKDPSDFPLVMRKQVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEELCCDLGSSLSRLLDMSEDSFWRTGWVYTRVQNRLAFIYSGQVVLDTPLPFKSHNCRISSIKPIAVPVSEQAQFVVKGFNLAGSATRLLCALEGRYLVQETCYELTEGTDTFIEHDDLQCLSFPCSVPNISGRGFIEVEDHGLNSSFFPFIVAEQDVCSEICMLEGVIDMVETAEDILRETGKMQAKYQALDFIHEMGWLLHRNYLKFRLGDMDPNLDLFPFKRFKCLMEFSVDHDWCAVVKKLLGIVFSGTVNAGEHPSIEIALLDMCLLHSAVRRNCRPMVELLLRFIPDKILDKSGSNDKRWPNSGSNYLFKPDFVGPAGLTPLHIAASMDGSENVLDALTDDPELVGIEAWKSARDKVGSTPNDYACLRGHNSYIQLVQKKINNKLNRRVVLDIPDAPLDCNTKPKPSDGLKSVRVPSLQIEKQAARQHCKLCEQKLAYGDTRMRTSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLKYGSS* 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2565342 2574143 - Vvi5g250 Vvi5g250 786392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g250 980 MobiDBLite consensus disorder prediction 394 420 - -
Vvi5g250 980 SUPERFAMILY SBT domain 123 205 IPR036893 GO:0003677|GO:0005634
Vvi5g250 980 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 979 - -
Vvi5g250 980 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 979 IPR044817 GO:0003677
Vvi5g250 980 SUPERFAMILY Ankyrin repeat 749 864 IPR036770 -
Vvi5g250 980 Gene3D - 118 186 IPR036893 GO:0003677|GO:0005634
Vvi5g250 980 Pfam SBP domain 125 198 IPR004333 GO:0003677
Vvi5g250 980 ProSiteProfiles Zinc finger SBP-type profile. 122 199 IPR004333 GO:0003677
Vvi5g250 980 Gene3D - 692 878 IPR036770 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14832 PF03110 SBP 2.30E-28 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g250 - - vvi:100252756 1941.78