Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g252 ATGAGTTGCTTCAGCTGTTGCGAAGAAGATGACATCCACAAGGCTTCTGATACTGGACCATATGTGGCAAATAATTCAGCAGTTGGCCATAATGGAAATTATCACATGACTGAAGCTTCACGATCAAACGACACACAAACTGTGGATGTCCTGCCTATTGCTGTCTCAGCCATCTCTGTGGATGAATTGAAAGAAATTACAGATAACTTTGGTCAACAGGCTTTAATTGGGGAAGGCTCATATGGAAGAGTATACCATGGTCTTCTGAAAACTGGGCAGGCTGCAGCCATAAAGAAGTTGGATTCCAGCAAGCAACCAGACCAAGAATTTTTAGCGCAGGTTTCCATGGTATCAAGACTAAAGAATGAGAATGTTGTTGAGCTAGTTGGCTATTCTGTTGATGGCGGTCTCCGTGTTGTAGCTTATGAGTATGCTTCTAATGGATCCCTTCATGATATTCTTCATGGAAGGAAAGGTGTCAAAGGAGCACAGCCAGGTCCAGTACTCTCATGGTCTCAAAGAGTTAAGATTGCGGTTGGAGCGGCTAAAGGACTAGAATATTTACATGAGAAGGCACGACCTCATATTATTCATCGTGACATCAAGTCCAGCAATGTGCTACTATTTGATGATGATGTTGCTAAGATTGCTGATTTTGATCTGTCAAATCAAGCCCCTGATTCAGCAGCACGTCTTCACTCTACTCGTGTCCTTGGAACCTTTGGTTATCACGCTCCAGAATATGCAATGACCGGACAGCTGAGTTCAAAGAGTGATGTTTACAGCTTTGGTGTTGTCCTGCTGGAACTCTTGACTGGGCGTAAACCTGTTGATCACACACTGCCACGTGGTCAGCAGAGTCTTGTAACATGGGCCACTCCAAAACTCAGTGAAGATAAGGTGAAGCAGTGTGTTGACACCAGACTAGGAGGAGAATACCCTCCCAAGGCTGTAGCAAAGATGGCTGCTGTTGCTGCCTTGTGTGTACAATATGAAGCTGATTTCCGGCCGAACATGAGCATTGTAGTCAAAGCTCTGCAGCCTCTGTTGAATGCTCGGCCTGGACATACACCAACCTTGTGA 1083 45.06 MSCFSCCEEDDIHKASDTGPYVANNSAVGHNGNYHMTEASRSNDTQTVDVLPIAVSAISVDELKEITDNFGQQALIGEGSYGRVYHGLLKTGQAAAIKKLDSSKQPDQEFLAQVSMVSRLKNENVVELVGYSVDGGLRVVAYEYASNGSLHDILHGRKGVKGAQPGPVLSWSQRVKIAVGAAKGLEYLHEKARPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPDSAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGHTPTL* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2586108 2591430 + Vvi5g252 Vvi5g252 786394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g252 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vvi5g252 360 Gene3D Phosphorylase Kinase; domain 1 30 144 - -
Vvi5g252 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vvi5g252 360 Gene3D Transferase(Phosphotransferase) domain 1 145 355 - -
Vvi5g252 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
Vvi5g252 360 ProSiteProfiles Protein kinase domain profile. 70 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g252 360 Pfam Protein tyrosine and serine/threonine kinase 74 346 IPR001245 GO:0004672|GO:0006468
Vvi5g252 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
Vvi5g252 360 CDD STKc_IRAK 76 349 - -
Vvi5g252 360 SMART serkin_6 70 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g252 360 SUPERFAMILY Protein kinase-like (PK-like) 44 346 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76656 PF07714 PK_Tyr_Ser-Thr 3.30E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g252 K13436 - vvi:100266523 707.983