Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g253 ATGGCGTCTGGTCTTCAGGCTGAACTATCCAAGAAGACATTTCTTTTTGGTCTTAAGGTGTGGGTTTTAGTGGGGATCTTTGTGGGGGTGTTTATTGTGATAATTCTCTTGTTGATGTCACTGTGTCTTACTTCACGGAAGAAATCAAGAAGGGCTAATAACAAAATTCCCCTTAGCCAAATTCCAGCTATTTCGAAGGAAATCAAAGAGGTAAGGGTTGATCAAGTTTCTGCAGACAACTGTGGTCCTCATGATGGAGTTTTCCTTGCCCTTAATGACAAATTCAGTGATAAAGAATCAGAGAAGGTTTTGATCCCCACAAAAAATGGGGATAATAGCAGTCAATCTGGTTCCTTTAATCATGTGGAGAAAGATGGTGTTGGGTCTCAATCAGGAGAAGAGGTTGGTTCTGGGACCATTAATGTGTATAGACCTTCTTCACATCCTATAACAGCCCCATCACCTCTAATTGGTTTGCCCGAGTTTTCTCACCTTGGTTGGGGCCATTGGTTTACATTAAGGGACCTGGAGCTTGCAACAAACCGGTTTTCGAAGGAAAATGTCCTTGGTGAGGGTGGGTATGGAATTGTTTATCGAGGCCATCTGATCAATGGGACTCCCGTGGCTGTTAAGAAGCTCCTCAATAATTTAGGACAAGCAGAGAAGGAATTCAGAGTGGAAGTTGAGGCTATTGGTCATGTGCGACATAAAAACTTAGTTCGACTTCTGGGCTACTGCATTGAAGGAACCCATAGGCTGTTGGTATATGAATACGTCAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCGATGCGTCAGCATGGATATCTTACTTGGGAGGCCCGCATGAAAATTTTACTTGGCACTGCTAAGGCGCTCGCCTACTTGCATGAAGCTATTGAACCAAAAGTTGTGCATCGAGATATCAAATCCAGCAATATATTGATTGATGATGAATTTAATGCTAAGATATCTGACTTTGGTCTGGCCAAATTACTCGGTGCAGGAAGGAGTCATATCACAACTAGAGTTATGGGGACCTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGCCTTTTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTTGTGCTCTTGGAAGCAATCACTGGAAGAGATCCAGTAGATTACGGTCGACCTGCACATGAGGTAAATCTTGTTGATTGGCTCAAGATGATGGTTGGCAGCAGGCGCTCAGAAGAAGTTGTAGACCCAAACATTGAGACTAGGCCATCAACAAGTGCCCTTAAAAGAGGCCTTTTGACTGCATTAAGGTGTGTCGACCCAGATGCTGACAAGAGACCAAAGATGAGTCAAGTCGTTCGCATGCTTGAATCAGAGGAATATCCTATACCACGAGAGGATCGGAGGCGCAGAAGGAGTCATGCAGGGAACAATGAAGCAGAGTCCCAGAGGGAGAACTCTGATACTGATAGGAGTGAAATTCCAGATTCAAGGGCAGAGAATAGAAGGAAGCATCGGACATCAGCAAAGGGGGCAAACCATTTATAG 1542 43.97 MASGLQAELSKKTFLFGLKVWVLVGIFVGVFIVIILLLMSLCLTSRKKSRRANNKIPLSQIPAISKEIKEVRVDQVSADNCGPHDGVFLALNDKFSDKESEKVLIPTKNGDNSSQSGSFNHVEKDGVGSQSGEEVGSGTINVYRPSSHPITAPSPLIGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGIVYRGHLINGTPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGYLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKISDFGLAKLLGAGRSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAHEVNLVDWLKMMVGSRRSEEVVDPNIETRPSTSALKRGLLTALRCVDPDADKRPKMSQVVRMLESEEYPIPREDRRRRRSHAGNNEAESQRENSDTDRSEIPDSRAENRRKHRTSAKGANHL* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2592612 2596009 - Vvi5g253 Vvi5g253 786395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g253 513 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g253 513 CDD STKc_IRAK 189 455 - -
Vvi5g253 513 MobiDBLite consensus disorder prediction 442 501 - -
Vvi5g253 513 MobiDBLite consensus disorder prediction 106 125 - -
Vvi5g253 513 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Vvi5g253 513 Gene3D Transferase(Phosphotransferase) domain 1 259 470 - -
Vvi5g253 513 SUPERFAMILY Protein kinase-like (PK-like) 167 462 IPR011009 -
Vvi5g253 513 PANTHER OS01G0323000 PROTEIN 2 505 - -
Vvi5g253 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Vvi5g253 513 ProSiteProfiles Protein kinase domain profile. 183 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g253 513 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Vvi5g253 513 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 505 - -
Vvi5g253 513 MobiDBLite consensus disorder prediction 105 134 - -
Vvi5g253 513 MobiDBLite consensus disorder prediction 442 513 - -
Vvi5g253 513 Pfam Protein kinase domain 184 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g253 Vvi14g39 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76657 PF00069 Pkinase 4.00E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g253 - - vvi:100261316 984.556