Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g256 ATGGCGGTTAAGAAACTGTGCGAGTCCTACTCAAAGAGTTTCAGAGGTGAGGTACAGAGATGGGGTTGTATGAAGCAGACTGGTGTGAGTTTGAGGTACATGATGGAGTTTGGGTCCAGACCCACTGAGAAAAATCTGCTTATCTCTGCTCAATTTCTTCACAAAGAACTCCCCATAAGAATCGCCAGGAGAGCCATTGAGCTCGAGAGCCTACCCTATGGCTTATCTGAAAAGCCTGCTGTTTTGGAGGTGAGGGACTGGTATTTGGACTCTTACCGTGACCTTCGGGCCTTTCCGGAGATCAAGGATAAAAATGATGAATTGGAATTCACGCAAATGATTAAGATGATTAAAGTGAGACACAACAATGTGGTTCCCACAATGGCTTTGGGTGTTCAACAGTTGAAGAAAGGCATTAATGTGAAGATTGTTTATGAGGATCTGGATGAGATTCATCAATTTTTAGATCGTTTCTACATGTCAAGGATTGGAATTCGCATGCTTATTGGGCAGCACGTAGAGCTGCATAATCCAAACCCAGCTCCAGATTGTGTGGGTTATATACACACAAAAATGTCTCCTGTGGAGGTAGCACGAAGTGCCAGTGAGGATGCCCGCTCTATTTGCTTACGAGAGTATGGCAGTGCACCGGATATTAGTATATATGGGGATCCCAATTTTACATTCCCTTATGTTCCAACACACTTGCATCTCATGGTATTTGAGTTGGTTAAAAACTCCTTGCGTGCTGTCCAAGAGCAGTTTATGGACTCTGACAAAGTTGCACCTCCTGTTCGAATAATAGTTGCTGATGGAATAGAGGATGTTACTATTAAGGTCTCAGATGAAGGGGGTGGAATCCCAAGAAGTGGCCTCCCTAAAATCTTTACATATCTTTATAGTACTGCAAAGAACCCGCTGGATGAGCAGTCAGATATTGGGTCATCTGGTGGGTTAACAATGGCTGGATATGGATATGGGCTTCCAATCAGTCGCTTATATGCGCGATATTTTGGCGGGGATCTGCAAATTATCTCCATGGAGGGATATGGGACTGACGCATATCTGCATCTGTCTCGATTGGGGGATTCACAAGAACCCCTCCCATGA 1110 44.41 MAVKKLCESYSKSFRGEVQRWGCMKQTGVSLRYMMEFGSRPTEKNLLISAQFLHKELPIRIARRAIELESLPYGLSEKPAVLEVRDWYLDSYRDLRAFPEIKDKNDELEFTQMIKMIKVRHNNVVPTMALGVQQLKKGINVKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPAPDCVGYIHTKMSPVEVARSASEDARSICLREYGSAPDISIYGDPNFTFPYVPTHLHLMVFELVKNSLRAVQEQFMDSDKVAPPVRIIVADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAKNPLDEQSDIGSSGGLTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2640363 2644421 + Vvi5g256 Vvi5g256 786398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g256 369 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 189 IPR018955 -
Vvi5g256 369 PANTHER PYRUVATE DEHYDROGENASE KINASE 1 369 IPR039028 GO:0004672
Vvi5g256 369 SMART HKATPase_4 231 362 IPR003594 -
Vvi5g256 369 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 17 179 IPR036784 -
Vvi5g256 369 Gene3D - 191 368 IPR036890 -
Vvi5g256 369 ProSiteProfiles Histidine kinase domain profile. 233 362 IPR005467 -
Vvi5g256 369 Gene3D - 13 183 IPR036784 -
Vvi5g256 369 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 233 359 IPR003594 -
Vvi5g256 369 PANTHER [PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)] KINASE, MITOCHONDRIAL 1 369 - -
Vvi5g256 369 PRINTS Bacterial sensor protein C-terminal signature 346 359 IPR004358 GO:0016310|GO:0016772
Vvi5g256 369 PRINTS Bacterial sensor protein C-terminal signature 322 340 IPR004358 GO:0016310|GO:0016772
Vvi5g256 369 PRINTS Bacterial sensor protein C-terminal signature 276 290 IPR004358 GO:0016310|GO:0016772
Vvi5g256 369 CDD HATPase_PDK-like 193 359 - -
Vvi5g256 369 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 188 358 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g256 K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4 [EC:2.7.11.2] - vvi:100245923 744.962
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g256 Vvi14g35 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g256 . Blo12g00373 Bda03g00837 . Bpe04g00792 . Bma04g00735 . . . . Cma14g01560 . Car14g01375 . . Cpe03g01304 Bhi01g01126 Tan10g1120 . . Hepe05g1346 . . . . . . . . . Cone14ag0680 Cone15ag0692 . . Lsi05g01389 . . Cme06g00829 . . . . . . . . . . Cmo14g01595 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003282 1 3 1 1 1 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 1 1 2 1 2 3 2 49