Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g258 ATGGTTGAAGAGATGACCTCACTTCGCTCCCCTGGATATTCTGACCCTGGATGGGAGCACGGCATTGCACAAGATGAGAGGAAGAAGAAGGTCAAATGCAATTATTGTGGGAAGATAGTTAGTGGTGGGATATACAGATTAAAGCAACACTTGGCTCGGGTTTCTGGAGAAGTTACATATTGTGACAAGGCTCCAGAGGAAGTGTATCTGAAAATGAGAGAAAATCTGGAAGGATGCCGTTCCAATAAGAAACCAAGGCAATCTGAAGATGATGGACATACATATTTGAATTTCCACCAAAATGATGATGAGGAGGAGGAGGAAGAGCATGCTGGCTACAGAAGCAAGGGAAAGCAATTGATGAGTGACAGGAATTTGGTTATAAATTTGGCCCCTCTTCGGTCATTAGGATATGTTGACCCCGGTTGGGAACATGGTGTTGCCCAGGATGAGAGGAAGAAAAAGGTAAAATGCAATTATTGTGAGAAAATAGTCAGTGGAGGCATTAATCGGTTTAAGCAACATCTAGCTAGAATACCTGGTGAAGTAGCACCTTGTAAAAATGCTCCTGAGGAAGTGTATCTTAAAATAAAAGAGAATATGAAATGGCATCGTACTGGGAGGAGGCACAGGCGACCTGATGCTAAGGAGATATCAGCTTTTTATATGAATTCAGATAATGACGATGAAGAGGATGAGCAAGATGAAGATGCCCTACATCGCATGAACAAAGAAAATCTGATAATTGGTGAGAAAAGATTGAGCAAAGACCTGAGGAAGACTTTTAGGGGTATTTCCCCCGGTAGTGGTTCTGAACCATCACTAAGAAGATCAAGATTGGATTCTGTTGTGCCAAAGACACCAAAGAGTCAGAAGGCACTTTCTTACAAGCAAGTAAAAGTAAAAACAGGATCCAGTAAGAAAACCCGCAAGGAAGTTATTTCTGCCATTTGCAAATTTTTCTATCATGCTGGAGTTCCTCTACATGCAGCAAATTCCCCATACTTCCATAAAATGCTGGAGTTGGTTGGTCAGTATGGACAGGGTTTGGTAGGCCCTCCAACCCAACTCATATCTGGTCGTTTTCTACAGGAAGAAATTGCGACCATTAAGAACTATCTAGCCGAGTATAAGGCATCCTGGGCAATTACTGGTTGCTCTATTAAGGCAGATAGTTGGAGAGATGCACAGGGTAGGACACTGATCAATATTTTGGTTTCCTGTCCACACGGTATATATTTTGTTTCTTCAGTTGATGCCACAGATATAGTAGATGATGCTACAAATTTATTCAAGTTGCTGGACAAAGTGGTGGAAGAGATGGGCGAGGAAAATGTAGTTCAGGTAATCACTGAGAACACTCCCAGTTATAAGGCTGCTGGAAAGATGCTTGAAGAGAAGAGGCGGAGTTTATTCTGGACCCCTTGCGCAGCCTATTGTATTGACCAGATGCTTGAAGATTTCATCGGGATAAAATTGGTAGGAGAATGCATGGAGAAAGGCCAAAAAATCACTAAGTTCATTTACAACCGAATTTGGTTGTTGAATCTTATGAAAAAGGAATTTACCCAGGGACAGGAACTTCTGAGGCCAGCCGTTAGTCGATGTGCCTCTAGCTTTGCTACTTTGCAAAGCTTGCTGGACCACAGGATAGGCCTTAAAAGACTGTTCCAGTCAAATAAATGGCTTTCATCTCGGTTCTCGAAGTCTGAAAAAGGTAAAGAGGTGGAAAAAATTGTATTAAATGCCACATTTTGGAAGAAGGTGCAGTATGTTAGGAAATCAGTGGACCCATTAGTGCAAGTGCTTCAAAAAGTAGATAGTGTTGAAAGTCTATCAATGCCATCTATATATAACGACATGTACAGGGCGAAGCTTGCTATCAGATCCACTCATGGTGATGATGCTCGTAAATATGGACCTTTCTGGGCCGTGATAGACAATCATTGGAGCTCATTGTTCCACCACCCTCTATATATGGCTGCCTACTTCTTGAATCCATCATACCGATATCGTTCCGATTTCTTAGTGCATCCAGAGGTGGTGCGAGGACTGAATGAGTGCATTGTTCGACTGGAGCCTGACAATATGCGAAGGATTTCTGCATCCATGCAGATTTCTGATTTTAATTCTGCAAAAGCTGATTTTGGAACGGAATTGGCAATTAGTACAAGAACAGAGCTGGATCCAGCTGCATGGTGGCAACAACATGGGATAAATTGCTTAGAACTGCAACGAATAGCTGTACGCATATTGAGTCAGACATGCTCATCCTTCGGTTGTGAGCATAACTGGAGTACATATGATCAGATCCACCGTGAAAGTCACAATCGTCTGGCTCAGAAAAGATTAAACGACCTCATCTATGTGCACTACAACTTGAGACTTAGAGAACGTCAATTGAGCAAAAGGTCTAATGACGTGATGTCCCTTGACAGTATTCTGCTTGAAAGTTTATTAGATGACTGGATTGTAGAGGCAGAGAACCCCACTGTGCAAGAGGACGAGGAGATACCTTATAATGAAATGGATCACACTGATGCATACGAGAACGATTTGATGGAGTATGAAGACGGAACAGCAGATGGTAGAAAGGCGTCGCTGGAGATGGTGACTCTGTCCAGTGTAGAGCCTTTGGATATCGTCAATCCTGCCTCTGCTGGTGTTGCTACTGATGATGATACCGATCTCAATTTTCTTGGTGATGATTTGAGTGACTAG 2721 42.52 MVEEMTSLRSPGYSDPGWEHGIAQDERKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCDKAPEEVYLKMRENLEGCRSNKKPRQSEDDGHTYLNFHQNDDEEEEEEHAGYRSKGKQLMSDRNLVINLAPLRSLGYVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKNAPEEVYLKIKENMKWHRTGRRHRRPDAKEISAFYMNSDNDDEEDEQDEDALHRMNKENLIIGEKRLSKDLRKTFRGISPGSGSEPSLRRSRLDSVVPKTPKSQKALSYKQVKVKTGSSKKTRKEVISAICKFFYHAGVPLHAANSPYFHKMLELVGQYGQGLVGPPTQLISGRFLQEEIATIKNYLAEYKASWAITGCSIKADSWRDAQGRTLINILVSCPHGIYFVSSVDATDIVDDATNLFKLLDKVVEEMGEENVVQVITENTPSYKAAGKMLEEKRRSLFWTPCAAYCIDQMLEDFIGIKLVGECMEKGQKITKFIYNRIWLLNLMKKEFTQGQELLRPAVSRCASSFATLQSLLDHRIGLKRLFQSNKWLSSRFSKSEKGKEVEKIVLNATFWKKVQYVRKSVDPLVQVLQKVDSVESLSMPSIYNDMYRAKLAIRSTHGDDARKYGPFWAVIDNHWSSLFHHPLYMAAYFLNPSYRYRSDFLVHPEVVRGLNECIVRLEPDNMRRISASMQISDFNSAKADFGTELAISTRTELDPAAWWQQHGINCLELQRIAVRILSQTCSSFGCEHNWSTYDQIHRESHNRLAQKRLNDLIYVHYNLRLRERQLSKRSNDVMSLDSILLESLLDDWIVEAENPTVQEDEEIPYNEMDHTDAYENDLMEYEDGTADGRKASLEMVTLSSVEPLDIVNPASAGVATDDDTDLNFLGDDLSD* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2650044 2654801 - Vvi5g258 Vvi5g258 786400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g258 906 ProSiteProfiles Zinc finger BED-type profile. 137 193 IPR003656 GO:0003677
Vvi5g258 906 SUPERFAMILY Ribonuclease H-like 377 797 IPR012337 -
Vvi5g258 906 Pfam hAT family C-terminal dimerisation region 724 794 IPR008906 GO:0046983
Vvi5g258 906 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g258 906 MobiDBLite consensus disorder prediction 79 100 - -
Vvi5g258 906 Pfam Protein of unknown function (DUF 659) 353 504 IPR007021 -
Vvi5g258 906 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 14 52 - -
Vvi5g258 906 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 49 867 - -
Vvi5g258 906 MobiDBLite consensus disorder prediction 261 298 - -
Vvi5g258 906 MobiDBLite consensus disorder prediction 284 298 - -
Vvi5g258 906 Pfam BED zinc finger 18 53 IPR003656 GO:0003677
Vvi5g258 906 Pfam BED zinc finger 143 178 IPR003656 GO:0003677
Vvi5g258 906 PANTHER OSJNBA0013A04.12 PROTEIN 49 867 - -
Vvi5g258 906 PANTHER OSJNBA0013A04.12 PROTEIN 14 52 - -
Vvi5g258 906 ProSiteProfiles Zinc finger BED-type profile. 12 68 IPR003656 GO:0003677
Vvi5g258 906 MobiDBLite consensus disorder prediction 79 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g258 - - - vvi:100247647 1810.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g258 Blo01g00023 . . . . . . Bma05g00985 . . . Cma14g01559 . Car14g01374 . . Cpe03g01303 Bhi01g01128 . . . Hepe05g1345 . Lcy11g1304 . . . . . . . . . . . Lsi05g01387 . . Cme06g00830 . . . . Bpe05g00794 . . . . . Cmo14g01593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007263 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 4 1 1 37