Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g259 ATGCAAGGAGGCAAGGTTGCTGTAGGAGGGATATCCATTATCCTTGTGGTGGGTGTGGCCATTGGCCTTATTGCTGGTTTACACGGCAGAGGTGGCCACAAGTCAACTGATGGGGACGACGAGAAGGTCCTCTCCACCACTACTAAGGCAGTGGCCGCAATCTGCTCGCCGACGGATTACAAGCAGCAATGTATTAGTAGTTTTCAGACGCTGGCCAATAACCATAGCGCCACCCCGAAGGATTTCCTCATGGCGGCCATTGATATCACCATGAAAGAGGTGAAAGAAGCCATTGGAAAGTCGGAATCAATCGGGCTGGCTGGGAACAGTTCTGGTAGGCAGAAGATGGCTACAGAAGATTGCCAGGATTTGTTGCAATTAGCCATTGGTGAGCTTCAAGCCTCCTTTTCAATGGTGGGTGATGCAGCAATGCATACCATCAATGACAGAGCGCAAGATCTCAAGAACTGGTTGAGTGCTGTTATTTCATATCAGCAGTCATGCATGGACGGGTTCGATGAGACACCGGAGGTGAAAAGCGCAATTCAGAACGGGCTTCTGAATGCCACTCAGCTCACCAGCAATGCCCTGGCCATTGTTTCTGAGATTTCTGCAATCCTCACCTCATTCAACATCCCCTTGAACTTCACTTCAAGCTTCAGGCGACTCCAGGAAGCCACTGAGGAAAGTGACCAGTACCCGTCATGGTTTTCGGCTGCAGACAGGAAACTATTGGGGCGTGTTGACAACGGCAAAGTGACGCCTAATGCAGTGGTGGCATTGGATGGGAGTGGACAATATAAATCCATTGGTGCAGCTCTTGCTGCCTATCCTAAGAACCTCAATGGGAGATATGTGATATACGTGAAGGCCGGGATTTACGACGAGTATATAACTATTGAGAAGAACCTGGTCAATATTTTCATGTATGGAGATGGACCCAGAAAGACCATGGTGACAGGGAAAAAGAGCTTCCTCGATGGCATAACCACCTACAAGACTTCCACCTTCTCGGTCATTGGAAACGGGTTTATATGCAAGTCCATGGGATTCCGGAACACGGCAGGGCCAGAGGGGCACCAGGCGGTGGCTCTGCGAGTGCAGTCGGACTATTCAGCCTTCTTCAACTGCAGAATGGATGGGTACCAGGACACCTTGTACGTGCAGGCGCATCGCCAGTTCTACCGCAACTGTGTCATCTCCGGGACTGTGGACTTCATCTTTGGCGATTCTACTACACTCATCCAGAACTCGTTGATCATAGTGAGGAAGCCGCTGGACAACCAGCAGAACACAATCACTGCACATGGAAGAGCAGAGAAGCGTGAGACCACAGGGCTGGTGATCCAGAACTGCAGAATTGTCCCAGAAGAGAAACTTTTTCCTACAAGATTTAAAACCCCATCATACCTGGGCCGCCCGTGGAAGGCATACTCAAGGACTGTGGTCATGGAATCCACCATGGGAGACTTCATCCACCCAGCAGGATGGCTACCATGGATGGGCAACTTTGCACTTGACACATTGTATTATGCCGAGTATGCTAACAAAGGACCCGGTGCCAACACGGCTCAGAGGGTTAAATGGAAGGGTTATAAGGTGATCACCAACAGAAATGAGGCTCTTCAATTCACTGCCGGCCCTTTTATCCAAGGTAACGAGTGGTTGAGACTCACCGGTGCACCTTACTTCCTCGGTTTCAGGACCATTTGTTATTATATGAAAGAGTAG 1731 49.86 MQGGKVAVGGISIILVVGVAIGLIAGLHGRGGHKSTDGDDEKVLSTTTKAVAAICSPTDYKQQCISSFQTLANNHSATPKDFLMAAIDITMKEVKEAIGKSESIGLAGNSSGRQKMATEDCQDLLQLAIGELQASFSMVGDAAMHTINDRAQDLKNWLSAVISYQQSCMDGFDETPEVKSAIQNGLLNATQLTSNALAIVSEISAILTSFNIPLNFTSSFRRLQEATEESDQYPSWFSAADRKLLGRVDNGKVTPNAVVALDGSGQYKSIGAALAAYPKNLNGRYVIYVKAGIYDEYITIEKNLVNIFMYGDGPRKTMVTGKKSFLDGITTYKTSTFSVIGNGFICKSMGFRNTAGPEGHQAVALRVQSDYSAFFNCRMDGYQDTLYVQAHRQFYRNCVISGTVDFIFGDSTTLIQNSLIIVRKPLDNQQNTITAHGRAEKRETTGLVIQNCRIVPEEKLFPTRFKTPSYLGRPWKAYSRTVVMESTMGDFIHPAGWLPWMGNFALDTLYYAEYANKGPGANTAQRVKWKGYKVITNRNEALQFTAGPFIQGNEWLRLTGAPYFLGFRTICYYMKE* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2656160 2658162 + Vvi5g259 Vvi5g259 786401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g259 576 Gene3D - 250 567 IPR012334 -
Vvi5g259 576 PANTHER PECTINESTERASE 4-RELATED 6 566 - -
Vvi5g259 576 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Vvi5g259 576 PANTHER PECTINESTERASE 6 566 - -
Vvi5g259 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 202 IPR006501 GO:0004857
Vvi5g259 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 203 IPR035513 -
Vvi5g259 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 204 IPR035513 -
Vvi5g259 576 Pfam Pectinesterase 256 553 IPR000070 GO:0030599|GO:0042545
Vvi5g259 576 SMART PMEI_2 46 199 IPR006501 GO:0004857
Vvi5g259 576 CDD PMEI-like_3 53 205 - -
Vvi5g259 576 SUPERFAMILY Pectin lyase-like 255 566 IPR011050 -
Vvi5g259 576 Pfam Plant invertase/pectin methylesterase inhibitor 50 199 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g259 Vvi7g513 ECH
Vvi5g259 Vvi7g512 ECH
Vvi5g259 Vvi14g31 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g259 K01051 - vvi:100242515 1121.3