Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g260 ATGTCGGCCGCATCCAGAGGCCTCATTTCTGGTTTCAGATTTCTCTCTATTGGTCCGAGAACATCCGCAATAGTAGCTTCGTATCAATTCAGGAGATTCGGGTCTGAGTCTCTGATCGATGAAGAGCCTCGGATAATCGTACCTAAGCCTGGAGTGATGTCTCCCAATTCCAAGAGGACTGGGGCTATCGCTGTCAAGTGTGGGATGAGTGCTCTCTGGGACAAATGGGGTGCTAGGGTTCCCATCACTGTGCTTTGGCTGGATGATAATATCGTTTCTCAAGTCAAGACCTTTGAGAAAGAGGGACTCAATGCGTTACAGGTTGGTTGCGGGCAGAAAAAGGCCAAGCATTTGACAAAACCCGAAGTGGGACATTTCAGAGCTCAAGGTGTTCCCCTGAAGAGGAAATTAAGGGAGTTTCCGGTAACCGAGGATGCACTCCTCCCAGTTGGTACAACAATTGGTGTACGCCATTTTGTTCCGGGCCAATATGTTGATGTAACAGGAATCACAAGAGGGAAAGGTTTTCAGGGTGGGATGAAAAGATGGGGATTTAAAGGAATGCCAGCATCTCATGGTGCATCATTATCACATCGGAGTATTGGTTCTACCGGTCAGAGGGATGCTCCTGGGAAGGTGTTTAAAGGCAAAAAGATGCCTGGTCGTATGGGAGGGAAGCAGCGAACAGTTAAAAACGTATGGGTCTACAAAATAGATCCTACAAGGAACTTGATGTGGGTTAGAGGCCAGGTCCCAGGTGCTGAAGGGAACTTTGTGTTTATAAAAGATGCTGTTTACAAGAAACCTGATGCTTCAATACTTCCATTCCCAACATATTTTCCTGCAGAAGATGAGGATCCAACAGTATTGGAACCTATTGTTGCTGATCTTGGAGATATAGATCCATTTATGGTGGCAGATTAA 924 46.21 MSAASRGLISGFRFLSIGPRTSAIVASYQFRRFGSESLIDEEPRIIVPKPGVMSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEKEGLNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGKKMPGRMGGKQRTVKNVWVYKIDPTRNLMWVRGQVPGAEGNFVFIKDAVYKKPDASILPFPTYFPAEDEDPTVLEPIVADLGDIDPFMVAD* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2661986 2665997 - Vvi5g260 Vvi5g260 786402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g260 307 Pfam Ribosomal protein L3 156 240 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vvi5g260 307 PANTHER BNAA01G27990D PROTEIN 1 307 - -
Vvi5g260 307 Hamap 50S ribosomal protein L3 [rplC]. 59 265 IPR019927 GO:0003735|GO:0005840|GO:0006412
Vvi5g260 307 PANTHER 50S RIBOSOMAL PROTEIN L3 1 307 IPR019927 GO:0003735|GO:0005840|GO:0006412
Vvi5g260 307 SUPERFAMILY Translation proteins 54 283 IPR009000 -
Vvi5g260 307 TIGRFAM L3_bact: 50S ribosomal protein uL3 62 262 IPR019927 GO:0003735|GO:0005840|GO:0006412
Vvi5g260 307 MobiDBLite consensus disorder prediction 194 225 - -
Vvi5g260 307 ProSitePatterns Ribosomal protein L3 signature. 159 182 IPR019926 -
Vvi5g260 307 Gene3D Translation factors 184 268 - -
Vvi5g260 307 Gene3D - 91 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g260 K02906 RP-L3, MRPL3, rplC; large subunit ribosomal protein L3 - vvi:100257955 621.698
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g260 . Blo12g00372 Bda03g00838 . Bpe04g00793 . Bma04g00736 . . . . . Car06g01348 . Sed02g1104 Cpe08g00132 . Bhi01g01131 Tan10g1125 Cmetu06g1995 . Hepe05g1343 . Lcy11g1303 . . . . . . . Cone14ag0677 Cone15ag0688 . . Lsi05g01384 . . Cme06g00832 . . . . . . . . . Cmo06g01582 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011772 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 3 1 1 30